Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNU6-469P-201ENST00000516253 101 ntBASIC0.95□□□□□ -2.26
CLIP3Q96DZ5 SCARNA16.5-201ENST00000517114 183 ntBASIC0.95□□□□□ -2.26
CLIP3Q96DZ5 RNU4-38P-201ENST00000364472 129 ntBASIC0.94□□□□□ -2.26
CLIP3Q96DZ5 RNU1-141P-201ENST00000364623 158 ntBASIC0.94□□□□□ -2.26
CLIP3Q96DZ5 RNU6-716P-201ENST00000365621 103 ntBASIC0.94□□□□□ -2.26
CLIP3Q96DZ5 RNU6-895P-201ENST00000384125 103 ntBASIC0.94□□□□□ -2.26
CLIP3Q96DZ5 RNU6-630P-201ENST00000391258 106 ntBASIC0.94□□□□□ -2.26
CLIP3Q96DZ5 RNU6-982P-201ENST00000516216 102 ntBASIC0.94□□□□□ -2.26
CLIP3Q96DZ5 RNU6-1216P-201ENST00000362590 107 ntBASIC0.93□□□□□ -2.26
CLIP3Q96DZ5 Y_RNA.443-201ENST00000384135 111 ntBASIC0.93□□□□□ -2.26
CLIP3Q96DZ5 RNU6-110P-201ENST00000384508 104 ntBASIC0.93□□□□□ -2.26
CLIP3Q96DZ5 MIR203A-201ENST00000384836 110 ntBASIC0.93□□□□□ -2.26
CLIP3Q96DZ5 snoU13.18-201ENST00000459483 104 ntBASIC0.93□□□□□ -2.26
CLIP3Q96DZ5 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.93□□□□□ -2.26
CLIP3Q96DZ5 MIR3657-201ENST00000584818 117 ntBASIC0.93□□□□□ -2.26
CLIP3Q96DZ5 MIR4653-201ENST00000585107 83 ntBASIC0.93□□□□□ -2.26
CLIP3Q96DZ5 MIR6509-201ENST00000614603 85 ntBASIC0.93□□□□□ -2.26
CLIP3Q96DZ5 AL162376.1-201ENST00000624117 175 ntBASIC0.93□□□□□ -2.26
CLIP3Q96DZ5 MIR6767-201ENST00000637302 66 ntBASIC0.93□□□□□ -2.26
CLIP3Q96DZ5 MIR18A-201ENST00000362310 71 ntBASIC0.92□□□□□ -2.26
CLIP3Q96DZ5 SNORA36.1-201ENST00000363424 132 ntBASIC0.92□□□□□ -2.26
CLIP3Q96DZ5 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.92□□□□□ -2.26
CLIP3Q96DZ5 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CLIP3Q96DZ5 SNORA8.2-201ENST00000384372 139 ntBASIC0.91□□□□□ -2.26
CLIP3Q96DZ5 MIR146A-201ENST00000385201 99 ntBASIC0.91□□□□□ -2.26
CLIP3Q96DZ5 MIR548L-201ENST00000408303 86 ntBASIC0.91□□□□□ -2.26
CLIP3Q96DZ5 MIR4460-201ENST00000577862 86 ntBASIC0.91□□□□□ -2.26
CLIP3Q96DZ5 AL109933.3-201ENST00000619095 188 ntBASIC0.91□□□□□ -2.26
CLIP3Q96DZ5 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.27
CLIP3Q96DZ5 SNORA25.4-201ENST00000363666 124 ntBASIC0.9□□□□□ -2.27
CLIP3Q96DZ5 RNU6-990P-201ENST00000364385 104 ntBASIC0.9□□□□□ -2.27
CLIP3Q96DZ5 RNA5SP484-201ENST00000458857 111 ntBASIC0.9□□□□□ -2.27
CLIP3Q96DZ5 AC018659.1-201ENST00000551083 169 ntBASIC0.9□□□□□ -2.27
CLIP3Q96DZ5 MIR6857-201ENST00000613267 93 ntBASIC0.9□□□□□ -2.27
CLIP3Q96DZ5 AC073869.9-201ENST00000641610 120 ntBASIC0.9□□□□□ -2.27
CLIP3Q96DZ5 RNU6-260P-201ENST00000384092 107 ntBASIC0.89□□□□□ -2.27
CLIP3Q96DZ5 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.89□□□□□ -2.27
CLIP3Q96DZ5 MIR6788-201ENST00000618842 66 ntBASIC0.89□□□□□ -2.27
CLIP3Q96DZ5 MIR7111-201ENST00000619751 72 ntBASIC0.89□□□□□ -2.27
CLIP3Q96DZ5 RNU4-45P-201ENST00000365469 141 ntBASIC0.88□□□□□ -2.27
CLIP3Q96DZ5 MIR532-201ENST00000385025 91 ntBASIC0.88□□□□□ -2.27
CLIP3Q96DZ5 MIR548J-201ENST00000408833 112 ntBASIC0.88□□□□□ -2.27
CLIP3Q96DZ5 RNA5SP222-201ENST00000411039 105 ntBASIC0.88□□□□□ -2.27
CLIP3Q96DZ5 RNU5B-6P-201ENST00000516765 68 ntBASIC0.88□□□□□ -2.27
CLIP3Q96DZ5 MIR151B-201ENST00000584249 96 ntBASIC0.88□□□□□ -2.27
CLIP3Q96DZ5 RNA5SP94-201ENST00000516917 108 ntBASIC0.87□□□□□ -2.27
CLIP3Q96DZ5 MIR4698-201ENST00000577795 80 ntBASIC0.87□□□□□ -2.27
CLIP3Q96DZ5 MIR4511-201ENST00000582784 87 ntBASIC0.87□□□□□ -2.27
CLIP3Q96DZ5 AC069503.3-201ENST00000618674 145 ntBASIC0.87□□□□□ -2.27
CLIP3Q96DZ5 SNORA2.1-201ENST00000363089 137 ntBASIC0.86□□□□□ -2.27
CLIP3Q96DZ5 MIR7-2-201ENST00000384970 110 ntBASIC0.86□□□□□ -2.27
CLIP3Q96DZ5 RNU6-1223P-201ENST00000517124 104 ntBASIC0.86□□□□□ -2.27
CLIP3Q96DZ5 MIR3973-201ENST00000579824 107 ntBASIC0.86□□□□□ -2.27
CLIP3Q96DZ5 MIR7107-201ENST00000611489 80 ntBASIC0.86□□□□□ -2.27
CLIP3Q96DZ5 MIR9-2-201ENST00000384838 87 ntBASIC0.85□□□□□ -2.27
CLIP3Q96DZ5 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.85□□□□□ -2.27
CLIP3Q96DZ5 MIR373-201ENST00000362273 69 ntBASIC0.84□□□□□ -2.27
CLIP3Q96DZ5 RNU6-645P-201ENST00000364649 106 ntBASIC0.84□□□□□ -2.27
CLIP3Q96DZ5 MIR489-201ENST00000384923 84 ntBASIC0.84□□□□□ -2.27
CLIP3Q96DZ5 RNA5SP227-201ENST00000516184 113 ntBASIC0.84□□□□□ -2.27
CLIP3Q96DZ5 RNU6-656P-201ENST00000516785 107 ntBASIC0.84□□□□□ -2.27
CLIP3Q96DZ5 RNA5SP268-201ENST00000516828 124 ntBASIC0.84□□□□□ -2.27
CLIP3Q96DZ5 MIR6739-201ENST00000622461 75 ntBASIC0.84□□□□□ -2.27
CLIP3Q96DZ5 SNORA36.2-201ENST00000384004 127 ntBASIC0.83□□□□□ -2.28
CLIP3Q96DZ5 RNA5SP147-201ENST00000516493 109 ntBASIC0.83□□□□□ -2.28
CLIP3Q96DZ5 RNU1-29P-201ENST00000606574 126 ntBASIC0.83□□□□□ -2.28
CLIP3Q96DZ5 AC103706.3-201ENST00000636297 85 ntBASIC0.83□□□□□ -2.28
CLIP3Q96DZ5 Y_RNA.375-201ENST00000365625 101 ntBASIC0.82□□□□□ -2.28
CLIP3Q96DZ5 RNY1P8-201ENST00000383970 114 ntBASIC0.82□□□□□ -2.28
CLIP3Q96DZ5 MIR548AE1-201ENST00000583292 70 ntBASIC0.82□□□□□ -2.28
CLIP3Q96DZ5 RNU6-668P-201ENST00000364180 107 ntBASIC0.81□□□□□ -2.28
CLIP3Q96DZ5 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.81□□□□□ -2.28
CLIP3Q96DZ5 MTND4LP1-201ENST00000446263 157 ntBASIC0.81□□□□□ -2.28
CLIP3Q96DZ5 AC110620.1-201ENST00000416042 228 ntBASIC0.8□□□□□ -2.28
CLIP3Q96DZ5 CYP3A137P-201ENST00000562436 69 ntBASIC0.8□□□□□ -2.28
CLIP3Q96DZ5 SNORA70.25-201ENST00000612741 95 ntBASIC0.8□□□□□ -2.28
CLIP3Q96DZ5 AC022709.1-201ENST00000615967 87 ntBASIC0.8□□□□□ -2.28
CLIP3Q96DZ5 MIR6515-201ENST00000619843 57 ntBASIC0.8□□□□□ -2.28
CLIP3Q96DZ5 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.8□□□□□ -2.28
CLIP3Q96DZ5 SNORD114-4-201ENST00000363962 75 ntBASIC0.79□□□□□ -2.28
CLIP3Q96DZ5 RNU6-669P-201ENST00000365575 107 ntBASIC0.79□□□□□ -2.28
CLIP3Q96DZ5 MIR652-201ENST00000385278 98 ntBASIC0.79□□□□□ -2.28
CLIP3Q96DZ5 Y_RNA.633-201ENST00000459107 95 ntBASIC0.79□□□□□ -2.28
CLIP3Q96DZ5 MIR4752-201ENST00000579672 72 ntBASIC0.79□□□□□ -2.28
CLIP3Q96DZ5 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.78□□□□□ -2.28
CLIP3Q96DZ5 Y_RNA.250-201ENST00000364542 110 ntBASIC0.78□□□□□ -2.28
CLIP3Q96DZ5 RNA5SP517-201ENST00000364724 117 ntBASIC0.78□□□□□ -2.28
CLIP3Q96DZ5 MIR582-201ENST00000365731 98 ntBASIC0.78□□□□□ -2.28
CLIP3Q96DZ5 Y_RNA.407-201ENST00000383986 113 ntBASIC0.78□□□□□ -2.28
CLIP3Q96DZ5 MIR140-201ENST00000385282 100 ntBASIC0.78□□□□□ -2.28
CLIP3Q96DZ5 SNORD110-201ENST00000408189 75 ntBASIC0.78□□□□□ -2.28
CLIP3Q96DZ5 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.78□□□□□ -2.28
CLIP3Q96DZ5 snoU13.13-201ENST00000458842 104 ntBASIC0.78□□□□□ -2.28
CLIP3Q96DZ5 SCARNA17.3-201ENST00000516381 125 ntBASIC0.78□□□□□ -2.28
CLIP3Q96DZ5 MIR5000-201ENST00000577717 103 ntBASIC0.78□□□□□ -2.28
CLIP3Q96DZ5 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.78□□□□□ -2.29
CLIP3Q96DZ5 SNORD114-2-201ENST00000363953 78 ntBASIC0.77□□□□□ -2.29
CLIP3Q96DZ5 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.77□□□□□ -2.29
CLIP3Q96DZ5 AC006210.1-201ENST00000424882 111 ntBASIC0.77□□□□□ -2.29
CLIP3Q96DZ5 AL590095.2-201ENST00000604136 117 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 189.4 ms