Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MIR548U-201ENST00000390728 81 ntBASIC-1.49□□□□□ -2.65
SCN3AQ9NY46 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.49□□□□□ -2.65
SCN3AQ9NY46 RNU2-51P-201ENST00000410708 197 ntBASIC-1.49□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.651-201ENST00000459380 103 ntBASIC-1.49□□□□□ -2.65
SCN3AQ9NY46 MIR4464-201ENST00000580818 92 ntBASIC-1.49□□□□□ -2.65
SCN3AQ9NY46 U6atac.1-201ENST00000616025 117 ntBASIC-1.49□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.213-201ENST00000364178 111 ntBASIC-1.49□□□□□ -2.65
SCN3AQ9NY46 RNU6-647P-201ENST00000364243 107 ntBASIC-1.49□□□□□ -2.65
SCN3AQ9NY46 SNORD50.2-201ENST00000365465 70 ntBASIC-1.49□□□□□ -2.65
SCN3AQ9NY46 MTND1P19-201ENST00000511780 315 ntBASIC-1.49□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.155-201ENST00000363632 101 ntBASIC-1.5□□□□□ -2.65
SCN3AQ9NY46 MIR1255B2-201ENST00000408618 67 ntBASIC-1.5□□□□□ -2.65
SCN3AQ9NY46 RNA5SP272-201ENST00000516095 111 ntBASIC-1.5□□□□□ -2.65
SCN3AQ9NY46 CYP3A54P-201ENST00000566950 75 ntBASIC-1.5□□□□□ -2.65
SCN3AQ9NY46 AC134503.1-201ENST00000633048 54 ntBASIC-1.5□□□□□ -2.65
SCN3AQ9NY46 RNU6-1233P-201ENST00000362922 102 ntBASIC-1.5□□□□□ -2.65
SCN3AQ9NY46 MIR577-201ENST00000385196 96 ntBASIC-1.5□□□□□ -2.65
SCN3AQ9NY46 RNU6-988P-201ENST00000519081 107 ntBASIC-1.5□□□□□ -2.65
SCN3AQ9NY46 AC068339.1-201ENST00000526965 141 ntBASIC-1.5□□□□□ -2.65
SCN3AQ9NY46 DNAJC19P2-201ENST00000593340 302 ntBASIC-1.5□□□□□ -2.65
SCN3AQ9NY46 MIR6888-201ENST00000621977 67 ntBASIC-1.5□□□□□ -2.65
SCN3AQ9NY46 RNU6-832P-201ENST00000363319 107 ntBASIC-1.51□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.158-201ENST00000363651 101 ntBASIC-1.51□□□□□ -2.65
SCN3AQ9NY46 AL513043.2-201ENST00000573941 143 ntBASIC-1.51□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.182-201ENST00000363880 111 ntBASIC-1.52□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.344-201ENST00000365381 112 ntBASIC-1.52□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.52□□□□□ -2.65
SCN3AQ9NY46 SNORA19.1-201ENST00000410656 129 ntBASIC-1.52□□□□□ -2.65
SCN3AQ9NY46 RNU4-61P-201ENST00000411243 107 ntBASIC-1.52□□□□□ -2.65
SCN3AQ9NY46 RNU6-62P-201ENST00000516526 102 ntBASIC-1.52□□□□□ -2.65
SCN3AQ9NY46 RNU7-6P-201ENST00000516845 62 ntBASIC-1.52□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.52□□□□□ -2.65
SCN3AQ9NY46 AL353691.2-201ENST00000443795 59 ntBASIC-1.52□□□□□ -2.65
SCN3AQ9NY46 MTND5P20-201ENST00000448677 143 ntBASIC-1.52□□□□□ -2.65
SCN3AQ9NY46 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-1.52□□□□□ -2.65
SCN3AQ9NY46 AC025521.1-201ENST00000621624 286 ntBASIC-1.52□□□□□ -2.65
SCN3AQ9NY46 RNU6-275P-201ENST00000364910 107 ntBASIC-1.53□□□□□ -2.65
SCN3AQ9NY46 RNU6-409P-201ENST00000384114 104 ntBASIC-1.53□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.483-201ENST00000384380 101 ntBASIC-1.53□□□□□ -2.65
SCN3AQ9NY46 MIR1302-6-201ENST00000408466 90 ntBASIC-1.53□□□□□ -2.65
SCN3AQ9NY46 AL589823.1-201ENST00000429577 183 ntBASIC-1.53□□□□□ -2.65
SCN3AQ9NY46 Y_RNA.686-201ENST00000516548 134 ntBASIC-1.53□□□□□ -2.65
SCN3AQ9NY46 RNU6-1271P-201ENST00000517049 105 ntBASIC-1.53□□□□□ -2.65
SCN3AQ9NY46 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.53□□□□□ -2.65
SCN3AQ9NY46 MIR6509-201ENST00000614603 85 ntBASIC-1.53□□□□□ -2.65
SCN3AQ9NY46 RNU6-132P-201ENST00000383863 107 ntBASIC-1.54□□□□□ -2.66
SCN3AQ9NY46 Y_RNA.419-201ENST00000384041 102 ntBASIC-1.54□□□□□ -2.66
SCN3AQ9NY46 RNU6-260P-201ENST00000384092 107 ntBASIC-1.54□□□□□ -2.66
SCN3AQ9NY46 MIR4680-201ENST00000580906 66 ntBASIC-1.54□□□□□ -2.66
SCN3AQ9NY46 MIR3657-201ENST00000584818 117 ntBASIC-1.54□□□□□ -2.66
SCN3AQ9NY46 MIR6502-201ENST00000617296 76 ntBASIC-1.54□□□□□ -2.66
SCN3AQ9NY46 RNU7-85P-201ENST00000458851 63 ntBASIC-1.54□□□□□ -2.66
SCN3AQ9NY46 SNORD115-33-201ENST00000363723 82 ntBASIC-1.55□□□□□ -2.66
SCN3AQ9NY46 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.55□□□□□ -2.66
SCN3AQ9NY46 MIR548A1-201ENST00000385041 97 ntBASIC-1.55□□□□□ -2.66
SCN3AQ9NY46 MIR203A-201ENST00000384836 110 ntBASIC-1.56□□□□□ -2.66
SCN3AQ9NY46 RBMX2P4-201ENST00000441256 376 ntBASIC-1.56□□□□□ -2.66
SCN3AQ9NY46 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.56□□□□□ -2.66
SCN3AQ9NY46 Y_RNA.198-201ENST00000364013 98 ntBASIC-1.56□□□□□ -2.66
SCN3AQ9NY46 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.56□□□□□ -2.66
SCN3AQ9NY46 AL160413.1-201ENST00000622780 310 ntBASIC-1.56□□□□□ -2.66
SCN3AQ9NY46 RNY4P7-201ENST00000364600 96 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 RNU6-985P-201ENST00000410182 104 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 Y_RNA.619-201ENST00000410951 90 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 Y_RNA.690-201ENST00000516603 95 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 MIR664B-201ENST00000626756 61 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 SNORD18.1-201ENST00000363807 70 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 SNORA33.1-201ENST00000364957 130 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 Y_RNA.461-201ENST00000384263 103 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 MIR548D2-201ENST00000384955 97 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 RNU6-635P-201ENST00000516651 102 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 RNU6-1153P-201ENST00000516760 105 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 AC139792.2-201ENST00000624218 587 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 U6.96-201ENST00000636425 70 ntBASIC-1.57□□□□□ -2.66
SCN3AQ9NY46 RNY4P28-201ENST00000365281 93 ntBASIC-1.58□□□□□ -2.66
SCN3AQ9NY46 AC018880.2-201ENST00000414265 201 ntBASIC-1.58□□□□□ -2.66
SCN3AQ9NY46 Y_RNA.145-201ENST00000363527 102 ntBASIC-1.59□□□□□ -2.66
SCN3AQ9NY46 MIR519A2-201ENST00000384990 87 ntBASIC-1.59□□□□□ -2.66
SCN3AQ9NY46 RNU6-412P-201ENST00000516434 106 ntBASIC-1.59□□□□□ -2.66
SCN3AQ9NY46 RNU6-1137P-201ENST00000517073 99 ntBASIC-1.59□□□□□ -2.66
SCN3AQ9NY46 AC130289.1-201ENST00000577321 73 ntBASIC-1.59□□□□□ -2.66
SCN3AQ9NY46 MIR4795-201ENST00000584182 89 ntBASIC-1.59□□□□□ -2.66
SCN3AQ9NY46 RNU6-990P-201ENST00000364385 104 ntBASIC-1.59□□□□□ -2.66
SCN3AQ9NY46 RNU6-746P-201ENST00000384112 109 ntBASIC-1.59□□□□□ -2.66
SCN3AQ9NY46 MT-TD-201ENST00000387419 68 ntBASIC-1.59□□□□□ -2.66
SCN3AQ9NY46 MTND2P23-201ENST00000422990 651 ntBASIC-1.59□□□□□ -2.66
SCN3AQ9NY46 U7.5-201ENST00000517224 61 ntBASIC-1.59□□□□□ -2.66
SCN3AQ9NY46 RNA5SP136-201ENST00000410906 107 ntBASIC-1.6□□□□□ -2.67
SCN3AQ9NY46 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.6□□□□□ -2.67
SCN3AQ9NY46 Y_RNA.144-201ENST00000363521 113 ntBASIC-1.61□□□□□ -2.67
SCN3AQ9NY46 RNU6-164P-201ENST00000364604 103 ntBASIC-1.61□□□□□ -2.67
SCN3AQ9NY46 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.61□□□□□ -2.67
SCN3AQ9NY46 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.61□□□□□ -2.67
SCN3AQ9NY46 Y_RNA.431-201ENST00000384086 102 ntBASIC-1.61□□□□□ -2.67
SCN3AQ9NY46 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.61□□□□□ -2.67
SCN3AQ9NY46 SNORD63.1-201ENST00000516178 80 ntBASIC-1.61□□□□□ -2.67
SCN3AQ9NY46 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.61□□□□□ -2.67
SCN3AQ9NY46 Y_RNA.337-201ENST00000365312 102 ntBASIC-1.61□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 236 ms