Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MIR760-201ENST00000390220 80 ntBASIC0.09□□□□□ -2.4
CCDC3Q9BQI4 RNU6-816P-201ENST00000390914 107 ntBASIC0.09□□□□□ -2.4
CCDC3Q9BQI4 RNU6-1268P-201ENST00000391214 107 ntBASIC0.09□□□□□ -2.4
CCDC3Q9BQI4 RNU6-1254P-201ENST00000391266 104 ntBASIC0.09□□□□□ -2.4
CCDC3Q9BQI4 RNU6-1239P-201ENST00000391310 107 ntBASIC0.09□□□□□ -2.4
CCDC3Q9BQI4 MIR1295A-201ENST00000408463 79 ntBASIC0.09□□□□□ -2.4
CCDC3Q9BQI4 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.09□□□□□ -2.4
CCDC3Q9BQI4 MIR4752-201ENST00000579672 72 ntBASIC0.09□□□□□ -2.4
CCDC3Q9BQI4 AL442128.1-201ENST00000615151 90 ntBASIC0.09□□□□□ -2.4
CCDC3Q9BQI4 U6.95-201ENST00000636931 70 ntBASIC0.09□□□□□ -2.4
CCDC3Q9BQI4 Y_RNA.155-201ENST00000363632 101 ntBASIC0.08□□□□□ -2.4
CCDC3Q9BQI4 RNU6-704P-201ENST00000364162 103 ntBASIC0.08□□□□□ -2.4
CCDC3Q9BQI4 RNU6-1201P-201ENST00000384227 107 ntBASIC0.08□□□□□ -2.4
CCDC3Q9BQI4 RNU6-524P-201ENST00000384270 107 ntBASIC0.08□□□□□ -2.4
CCDC3Q9BQI4 RNU6-269P-201ENST00000391077 97 ntBASIC0.08□□□□□ -2.4
CCDC3Q9BQI4 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.08□□□□□ -2.4
CCDC3Q9BQI4 RNU7-13P-201ENST00000516413 62 ntBASIC0.08□□□□□ -2.4
CCDC3Q9BQI4 RNU6-659P-201ENST00000516454 104 ntBASIC0.08□□□□□ -2.4
CCDC3Q9BQI4 RNU6-782P-201ENST00000516852 104 ntBASIC0.08□□□□□ -2.4
CCDC3Q9BQI4 RNU6-971P-201ENST00000516920 106 ntBASIC0.08□□□□□ -2.4
CCDC3Q9BQI4 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.08□□□□□ -2.4
CCDC3Q9BQI4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.07□□□□□ -2.4
CCDC3Q9BQI4 SNORD114-9-201ENST00000364370 72 ntBASIC0.07□□□□□ -2.4
CCDC3Q9BQI4 MIR516A2-201ENST00000384888 90 ntBASIC0.07□□□□□ -2.4
CCDC3Q9BQI4 MIR516A1-201ENST00000385033 90 ntBASIC0.07□□□□□ -2.4
CCDC3Q9BQI4 SNORD36A-201ENST00000362874 73 ntBASIC0.06□□□□□ -2.4
CCDC3Q9BQI4 RNA5SP214-201ENST00000363378 118 ntBASIC0.06□□□□□ -2.4
CCDC3Q9BQI4 RNU6-127P-201ENST00000390897 107 ntBASIC0.06□□□□□ -2.4
CCDC3Q9BQI4 MIR892B-201ENST00000401279 77 ntBASIC0.06□□□□□ -2.4
CCDC3Q9BQI4 SPINT5P-201ENST00000448174 155 ntBASIC0.06□□□□□ -2.4
CCDC3Q9BQI4 RNU7-107P-201ENST00000459121 61 ntBASIC0.06□□□□□ -2.4
CCDC3Q9BQI4 RNU7-129P-201ENST00000516128 62 ntBASIC0.06□□□□□ -2.4
CCDC3Q9BQI4 RNU6-1232P-201ENST00000516299 86 ntBASIC0.06□□□□□ -2.4
CCDC3Q9BQI4 AC141557.1-201ENST00000540982 400 ntBASIC0.06□□□□□ -2.4
CCDC3Q9BQI4 MIR548AD-201ENST00000584780 82 ntBASIC0.06□□□□□ -2.4
CCDC3Q9BQI4 RNU6-161P-201ENST00000363051 106 ntBASIC0.05□□□□□ -2.4
CCDC3Q9BQI4 RNU6-243P-201ENST00000391140 107 ntBASIC0.05□□□□□ -2.4
CCDC3Q9BQI4 AC007012.1-201ENST00000567192 175 ntBASIC0.05□□□□□ -2.4
CCDC3Q9BQI4 MIR4694-201ENST00000578534 80 ntBASIC0.05□□□□□ -2.4
CCDC3Q9BQI4 MIR3133-201ENST00000583157 78 ntBASIC0.05□□□□□ -2.4
CCDC3Q9BQI4 MIR4768-201ENST00000585270 74 ntBASIC0.05□□□□□ -2.4
CCDC3Q9BQI4 AC096720.1-201ENST00000604441 183 ntBASIC0.05□□□□□ -2.4
CCDC3Q9BQI4 Y_RNA.57-201ENST00000362806 113 ntBASIC0.04□□□□□ -2.4
CCDC3Q9BQI4 Y_RNA.71-201ENST00000362892 104 ntBASIC0.04□□□□□ -2.4
CCDC3Q9BQI4 Y_RNA.247-201ENST00000364500 92 ntBASIC0.04□□□□□ -2.4
CCDC3Q9BQI4 RNU6-652P-201ENST00000365488 107 ntBASIC0.04□□□□□ -2.4
CCDC3Q9BQI4 Y_RNA.563-201ENST00000384707 108 ntBASIC0.04□□□□□ -2.4
CCDC3Q9BQI4 Y_RNA.649-201ENST00000459077 103 ntBASIC0.04□□□□□ -2.4
CCDC3Q9BQI4 RNA5SP285-201ENST00000516619 119 ntBASIC0.04□□□□□ -2.4
CCDC3Q9BQI4 Y_RNA.218-201ENST00000364218 104 ntBASIC0.03□□□□□ -2.4
CCDC3Q9BQI4 MIR617-201ENST00000385030 97 ntBASIC0.03□□□□□ -2.4
CCDC3Q9BQI4 MIR610-201ENST00000385139 96 ntBASIC0.03□□□□□ -2.4
CCDC3Q9BQI4 Y_RNA.660-201ENST00000516002 120 ntBASIC0.03□□□□□ -2.4
CCDC3Q9BQI4 MIR4290-201ENST00000583807 95 ntBASIC0.03□□□□□ -2.4
CCDC3Q9BQI4 AC104408.1-201ENST00000605241 170 ntBASIC0.03□□□□□ -2.4
CCDC3Q9BQI4 SNORA70.25-201ENST00000612741 95 ntBASIC0.03□□□□□ -2.4
CCDC3Q9BQI4 MIR499B-201ENST00000636498 73 ntBASIC0.03□□□□□ -2.4
CCDC3Q9BQI4 SNORD116-14-201ENST00000383894 92 ntBASIC0.02□□□□□ -2.41
CCDC3Q9BQI4 SNORD116-17-201ENST00000383929 92 ntBASIC0.02□□□□□ -2.41
CCDC3Q9BQI4 Y_RNA.433-201ENST00000384089 102 ntBASIC0.02□□□□□ -2.41
CCDC3Q9BQI4 SNORD116-15-201ENST00000384445 92 ntBASIC0.02□□□□□ -2.41
CCDC3Q9BQI4 SNORD116-19-201ENST00000384729 92 ntBASIC0.02□□□□□ -2.41
CCDC3Q9BQI4 MIR643-201ENST00000385267 97 ntBASIC0.02□□□□□ -2.41
CCDC3Q9BQI4 MT-TR-201ENST00000387439 65 ntBASIC0.02□□□□□ -2.41
CCDC3Q9BQI4 MIR501-201ENST00000390204 84 ntBASIC0.02□□□□□ -2.41
CCDC3Q9BQI4 AC068339.1-201ENST00000526965 141 ntBASIC0.02□□□□□ -2.41
CCDC3Q9BQI4 MIR4439-201ENST00000583746 80 ntBASIC0.02□□□□□ -2.41
CCDC3Q9BQI4 MTRNR2L2-201ENST00000604882 87 ntBASIC0.02□□□□□ -2.41
CCDC3Q9BQI4 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.02□□□□□ -2.41
CCDC3Q9BQI4 RNU6-1125P-201ENST00000363601 107 ntBASIC0.01□□□□□ -2.41
CCDC3Q9BQI4 Y_RNA.178-201ENST00000363832 102 ntBASIC0.01□□□□□ -2.41
CCDC3Q9BQI4 RNU6-1163P-201ENST00000364516 107 ntBASIC0.01□□□□□ -2.41
CCDC3Q9BQI4 RNU6-480P-201ENST00000384332 107 ntBASIC0.01□□□□□ -2.41
CCDC3Q9BQI4 MIR577-201ENST00000385196 96 ntBASIC0.01□□□□□ -2.41
CCDC3Q9BQI4 AC093423.1-201ENST00000440817 142 ntBASIC0.01□□□□□ -2.41
CCDC3Q9BQI4 AL035470.1-201ENST00000622571 220 ntBASIC0.01□□□□□ -2.41
CCDC3Q9BQI4 MIR371B-201ENST00000638082 66 ntBASIC0.01□□□□□ -2.41
CCDC3Q9BQI4 RNY3P2-201ENST00000362918 102 ntBASIC0□□□□□ -2.41
CCDC3Q9BQI4 SNORD114-5-201ENST00000362928 70 ntBASIC0□□□□□ -2.41
CCDC3Q9BQI4 Y_RNA.125-201ENST00000363371 111 ntBASIC0□□□□□ -2.41
CCDC3Q9BQI4 RNU1-141P-201ENST00000364623 158 ntBASIC0□□□□□ -2.41
CCDC3Q9BQI4 RNU6-81P-201ENST00000365608 104 ntBASIC0□□□□□ -2.41
CCDC3Q9BQI4 MIR329-2-201ENST00000385029 84 ntBASIC0□□□□□ -2.41
CCDC3Q9BQI4 SNORD110-201ENST00000408189 75 ntBASIC0□□□□□ -2.41
CCDC3Q9BQI4 MIR548H2-201ENST00000408874 88 ntBASIC0□□□□□ -2.41
CCDC3Q9BQI4 MIR4667-201ENST00000578933 66 ntBASIC0□□□□□ -2.41
CCDC3Q9BQI4 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0□□□□□ -2.41
CCDC3Q9BQI4 RNU6-832P-201ENST00000363319 107 ntBASIC-0.01□□□□□ -2.41
CCDC3Q9BQI4 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.01□□□□□ -2.41
CCDC3Q9BQI4 AC006210.1-201ENST00000424882 111 ntBASIC-0.01□□□□□ -2.41
CCDC3Q9BQI4 MIR5009-201ENST00000578736 100 ntBASIC-0.01□□□□□ -2.41
CCDC3Q9BQI4 MIR548AG2-201ENST00000581228 64 ntBASIC-0.01□□□□□ -2.41
CCDC3Q9BQI4 MIR4677-201ENST00000584153 80 ntBASIC-0.01□□□□□ -2.41
CCDC3Q9BQI4 TRDV1-202ENST00000621643 102 ntBASIC-0.01□□□□□ -2.41
CCDC3Q9BQI4 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-0.01□□□□□ -2.41
CCDC3Q9BQI4 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.02□□□□□ -2.41
CCDC3Q9BQI4 MIR519E-201ENST00000385075 84 ntBASIC-0.02□□□□□ -2.41
CCDC3Q9BQI4 MIR548A3-201ENST00000385297 97 ntBASIC-0.02□□□□□ -2.41
CCDC3Q9BQI4 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.02□□□□□ -2.41
CCDC3Q9BQI4 RNA5SP484-201ENST00000458857 111 ntBASIC-0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 208.8 ms