Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SNORD113.3-201ENST00000364630 78 ntBASIC1.39□□□□□ -2.19
USP39Q53GS9 SNORD114-22-201ENST00000365423 72 ntBASIC1.39□□□□□ -2.19
USP39Q53GS9 MIR1257-201ENST00000408490 117 ntBASIC1.39□□□□□ -2.19
USP39Q53GS9 AC092628.1-201ENST00000436250 252 ntBASIC1.39□□□□□ -2.19
USP39Q53GS9 RNA5SP61-201ENST00000516453 100 ntBASIC1.39□□□□□ -2.19
USP39Q53GS9 MIR3134-201ENST00000579433 74 ntBASIC1.39□□□□□ -2.19
USP39Q53GS9 MIR101-2-201ENST00000362195 79 ntBASIC1.38□□□□□ -2.19
USP39Q53GS9 MIR26B-201ENST00000362251 77 ntBASIC1.38□□□□□ -2.19
USP39Q53GS9 RNU6-1260P-201ENST00000362944 107 ntBASIC1.38□□□□□ -2.19
USP39Q53GS9 RNU6-934P-201ENST00000365154 107 ntBASIC1.38□□□□□ -2.19
USP39Q53GS9 RNU6-1065P-201ENST00000384513 106 ntBASIC1.38□□□□□ -2.19
USP39Q53GS9 MIR548U-201ENST00000390728 81 ntBASIC1.38□□□□□ -2.19
USP39Q53GS9 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
USP39Q53GS9 Y_RNA.660-201ENST00000516002 120 ntBASIC1.38□□□□□ -2.19
USP39Q53GS9 RNU6-765P-201ENST00000516916 99 ntBASIC1.38□□□□□ -2.19
USP39Q53GS9 RNU6-448P-201ENST00000517052 107 ntBASIC1.38□□□□□ -2.19
USP39Q53GS9 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.38□□□□□ -2.19
USP39Q53GS9 MIR548H5-201ENST00000580314 60 ntBASIC1.38□□□□□ -2.19
USP39Q53GS9 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.38□□□□□ -2.19
USP39Q53GS9 Y_RNA.330-201ENST00000365230 109 ntBASIC1.37□□□□□ -2.19
USP39Q53GS9 Y_RNA.545-201ENST00000384652 105 ntBASIC1.37□□□□□ -2.19
USP39Q53GS9 MIR125B2-201ENST00000385128 89 ntBASIC1.37□□□□□ -2.19
USP39Q53GS9 snoU13.17-201ENST00000458802 104 ntBASIC1.37□□□□□ -2.19
USP39Q53GS9 Y_RNA.809-201ENST00000516058 95 ntBASIC1.37□□□□□ -2.19
USP39Q53GS9 TRDV1-202ENST00000621643 102 ntBASIC1.37□□□□□ -2.19
USP39Q53GS9 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
USP39Q53GS9 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.36□□□□□ -2.19
USP39Q53GS9 RNU6-369P-201ENST00000362515 102 ntBASIC1.36□□□□□ -2.19
USP39Q53GS9 SNORD77.2-201ENST00000391045 68 ntBASIC1.36□□□□□ -2.19
USP39Q53GS9 SNORA31.2-201ENST00000516019 134 ntBASIC1.36□□□□□ -2.19
USP39Q53GS9 Y_RNA.697-201ENST00000516776 113 ntBASIC1.36□□□□□ -2.19
USP39Q53GS9 MIR4771-2-201ENST00000577758 74 ntBASIC1.36□□□□□ -2.19
USP39Q53GS9 MIR4771-1-201ENST00000582617 74 ntBASIC1.36□□□□□ -2.19
USP39Q53GS9 RNU7-10P-201ENST00000607194 63 ntBASIC1.36□□□□□ -2.19
USP39Q53GS9 AC106800.4-201ENST00000614905 153 ntBASIC1.36□□□□□ -2.19
USP39Q53GS9 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.35□□□□□ -2.19
USP39Q53GS9 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
USP39Q53GS9 MIR150-201ENST00000385048 84 ntBASIC1.35□□□□□ -2.19
USP39Q53GS9 MIR4696-201ENST00000581431 70 ntBASIC1.35□□□□□ -2.19
USP39Q53GS9 MTRNR2L2-201ENST00000604882 87 ntBASIC1.35□□□□□ -2.19
USP39Q53GS9 U6.100-201ENST00000636230 99 ntBASIC1.35□□□□□ -2.19
USP39Q53GS9 RNA5SP245-201ENST00000364239 121 ntBASIC1.34□□□□□ -2.19
USP39Q53GS9 RNU6-788P-201ENST00000390967 104 ntBASIC1.34□□□□□ -2.19
USP39Q53GS9 SNORD111-201ENST00000408139 94 ntBASIC1.34□□□□□ -2.19
USP39Q53GS9 RPS26P5-201ENST00000418544 335 ntBASIC1.34□□□□□ -2.19
USP39Q53GS9 AC097635.1-201ENST00000450678 155 ntBASIC1.34□□□□□ -2.19
USP39Q53GS9 RNU7-40P-201ENST00000516397 64 ntBASIC1.34□□□□□ -2.19
USP39Q53GS9 RN7SKP88-201ENST00000516847 250 ntBASIC1.34□□□□□ -2.19
USP39Q53GS9 AC023827.1-201ENST00000569247 97 ntBASIC1.34□□□□□ -2.19
USP39Q53GS9 7SK.8-201ENST00000612110 250 ntBASIC1.34□□□□□ -2.19
USP39Q53GS9 7SK.11-201ENST00000615477 250 ntBASIC1.34□□□□□ -2.19
USP39Q53GS9 MIR7974-201ENST00000615835 79 ntBASIC1.34□□□□□ -2.19
USP39Q53GS9 7SK.13-201ENST00000622040 250 ntBASIC1.34□□□□□ -2.19
USP39Q53GS9 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
USP39Q53GS9 RNU6-208P-201ENST00000362431 107 ntBASIC1.33□□□□□ -2.2
USP39Q53GS9 AC074348.1-201ENST00000426503 132 ntBASIC1.33□□□□□ -2.2
USP39Q53GS9 RNU7-21P-201ENST00000459430 62 ntBASIC1.33□□□□□ -2.2
USP39Q53GS9 RNU7-156P-201ENST00000517214 74 ntBASIC1.33□□□□□ -2.2
USP39Q53GS9 MIR4484-201ENST00000582855 83 ntBASIC1.33□□□□□ -2.2
USP39Q53GS9 MIR4676-201ENST00000583078 72 ntBASIC1.33□□□□□ -2.2
USP39Q53GS9 RMST_2.1-201ENST00000617263 136 ntBASIC1.33□□□□□ -2.2
USP39Q53GS9 RNU6-664P-201ENST00000362381 107 ntBASIC1.32□□□□□ -2.2
USP39Q53GS9 Y_RNA.264-201ENST00000364665 102 ntBASIC1.32□□□□□ -2.2
USP39Q53GS9 RNU6-1051P-201ENST00000365471 102 ntBASIC1.32□□□□□ -2.2
USP39Q53GS9 RNU6-291P-201ENST00000384720 107 ntBASIC1.32□□□□□ -2.2
USP39Q53GS9 RNU6-1265P-201ENST00000516342 103 ntBASIC1.32□□□□□ -2.2
USP39Q53GS9 RNU6-939P-201ENST00000384634 107 ntBASIC1.31□□□□□ -2.2
USP39Q53GS9 MIR599-201ENST00000385069 95 ntBASIC1.31□□□□□ -2.2
USP39Q53GS9 SNORA40.6-201ENST00000391153 128 ntBASIC1.31□□□□□ -2.2
USP39Q53GS9 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.31□□□□□ -2.2
USP39Q53GS9 RNU6-380P-201ENST00000410207 107 ntBASIC1.31□□□□□ -2.2
USP39Q53GS9 RNU6-1015P-201ENST00000517121 99 ntBASIC1.31□□□□□ -2.2
USP39Q53GS9 Y_RNA.239-201ENST00000364444 113 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 SNORA25.8-201ENST00000364831 128 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 SNORD101-201ENST00000384027 73 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 RNU6-411P-201ENST00000384451 107 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 MIR618-201ENST00000385287 98 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 AL591704.2-201ENST00000421658 181 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 AC114801.3-201ENST00000510231 177 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 RNU6-303P-201ENST00000517091 106 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 AC068338.1-201ENST00000565567 176 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 AC138907.6-201ENST00000568401 126 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 AC138869.1-201ENST00000568623 124 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 MIR3140-201ENST00000583685 90 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 MIR3660-201ENST00000584845 100 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 AC008608.1-201ENST00000603910 127 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 MIR664A-201ENST00000626086 82 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 MIR1297-201ENST00000637311 77 ntBASIC1.3□□□□□ -2.2
USP39Q53GS9 MIR96-201ENST00000362288 78 ntBASIC1.29□□□□□ -2.2
USP39Q53GS9 Y_RNA.12-201ENST00000362393 112 ntBASIC1.29□□□□□ -2.2
USP39Q53GS9 Y_RNA.207-201ENST00000364142 106 ntBASIC1.29□□□□□ -2.2
USP39Q53GS9 MIR758-201ENST00000390227 88 ntBASIC1.29□□□□□ -2.2
USP39Q53GS9 RNU6-910P-201ENST00000390844 107 ntBASIC1.29□□□□□ -2.2
USP39Q53GS9 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.29□□□□□ -2.2
USP39Q53GS9 RNU7-102P-201ENST00000458948 62 ntBASIC1.29□□□□□ -2.2
USP39Q53GS9 SNORD79.1-201ENST00000516069 84 ntBASIC1.29□□□□□ -2.2
USP39Q53GS9 RNU6-687P-201ENST00000516443 89 ntBASIC1.29□□□□□ -2.2
USP39Q53GS9 MIR4804-201ENST00000581683 73 ntBASIC1.29□□□□□ -2.2
USP39Q53GS9 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.29□□□□□ -2.2
USP39Q53GS9 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 205.5 ms