Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AL603914.1-201ENST00000401964 204 ntBASIC-0.05□□□□□ -2.42
DDX28Q9NUL7 Y_RNA.644-201ENST00000459006 113 ntBASIC-0.05□□□□□ -2.42
DDX28Q9NUL7 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.05□□□□□ -2.42
DDX28Q9NUL7 Y_RNA.674-201ENST00000516362 113 ntBASIC-0.05□□□□□ -2.42
DDX28Q9NUL7 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-0.05□□□□□ -2.42
DDX28Q9NUL7 RNU6V-201ENST00000384105 107 ntBASIC-0.06□□□□□ -2.42
DDX28Q9NUL7 RNU6-574P-201ENST00000384265 107 ntBASIC-0.06□□□□□ -2.42
DDX28Q9NUL7 MIR1265-201ENST00000408444 86 ntBASIC-0.06□□□□□ -2.42
DDX28Q9NUL7 RNU7-48P-201ENST00000458875 63 ntBASIC-0.06□□□□□ -2.42
DDX28Q9NUL7 Y_RNA.651-201ENST00000459380 103 ntBASIC-0.06□□□□□ -2.42
DDX28Q9NUL7 Y_RNA.690-201ENST00000516603 95 ntBASIC-0.06□□□□□ -2.42
DDX28Q9NUL7 RNA5SP476-201ENST00000516613 103 ntBASIC-0.06□□□□□ -2.42
DDX28Q9NUL7 RNU7-161P-201ENST00000517289 62 ntBASIC-0.06□□□□□ -2.42
DDX28Q9NUL7 AC141557.1-201ENST00000540982 400 ntBASIC-0.06□□□□□ -2.42
DDX28Q9NUL7 MIR4500-201ENST00000579472 76 ntBASIC-0.06□□□□□ -2.42
DDX28Q9NUL7 MIR4636-201ENST00000582271 80 ntBASIC-0.06□□□□□ -2.42
DDX28Q9NUL7 RNU1-29P-201ENST00000606574 126 ntBASIC-0.06□□□□□ -2.42
DDX28Q9NUL7 AL162376.1-201ENST00000624117 175 ntBASIC-0.06□□□□□ -2.42
DDX28Q9NUL7 RNU6-309P-201ENST00000364573 106 ntBASIC-0.07□□□□□ -2.42
DDX28Q9NUL7 RNU6-302P-201ENST00000365249 107 ntBASIC-0.07□□□□□ -2.42
DDX28Q9NUL7 MIR206-201ENST00000384872 86 ntBASIC-0.07□□□□□ -2.42
DDX28Q9NUL7 MIR548H2-201ENST00000408874 88 ntBASIC-0.07□□□□□ -2.42
DDX28Q9NUL7 MIR5589-201ENST00000579442 60 ntBASIC-0.07□□□□□ -2.42
DDX28Q9NUL7 MIR5706-201ENST00000579841 80 ntBASIC-0.07□□□□□ -2.42
DDX28Q9NUL7 MIR4743-201ENST00000584576 69 ntBASIC-0.07□□□□□ -2.42
DDX28Q9NUL7 MIR499B-201ENST00000636498 73 ntBASIC-0.07□□□□□ -2.42
DDX28Q9NUL7 RNA5SP403-201ENST00000363598 108 ntBASIC-0.08□□□□□ -2.42
DDX28Q9NUL7 Y_RNA.297-201ENST00000364950 91 ntBASIC-0.08□□□□□ -2.42
DDX28Q9NUL7 RNU6-449P-201ENST00000383914 107 ntBASIC-0.08□□□□□ -2.42
DDX28Q9NUL7 Y_RNA.448-201ENST00000384185 108 ntBASIC-0.08□□□□□ -2.42
DDX28Q9NUL7 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.08□□□□□ -2.42
DDX28Q9NUL7 MIR892B-201ENST00000401279 77 ntBASIC-0.08□□□□□ -2.42
DDX28Q9NUL7 MIR1912-201ENST00000410389 80 ntBASIC-0.08□□□□□ -2.42
DDX28Q9NUL7 HAR1A.1-201ENST00000459583 118 ntBASIC-0.08□□□□□ -2.42
DDX28Q9NUL7 RNU6-782P-201ENST00000516852 104 ntBASIC-0.08□□□□□ -2.42
DDX28Q9NUL7 AC141273.2-201ENST00000618989 130 ntBASIC-0.08□□□□□ -2.42
DDX28Q9NUL7 MIR3658-201ENST00000636291 56 ntBASIC-0.08□□□□□ -2.42
DDX28Q9NUL7 Y_RNA.240-201ENST00000364469 95 ntBASIC-0.09□□□□□ -2.42
DDX28Q9NUL7 MIR593-201ENST00000384856 100 ntBASIC-0.09□□□□□ -2.42
DDX28Q9NUL7 RNU7-104P-201ENST00000459398 79 ntBASIC-0.09□□□□□ -2.42
DDX28Q9NUL7 AP002392.1-201ENST00000537692 208 ntBASIC-0.09□□□□□ -2.42
DDX28Q9NUL7 RNU6-508P-201ENST00000363231 103 ntBASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 RNY1P11-201ENST00000363759 113 ntBASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 RNU6-652P-201ENST00000365488 107 ntBASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 MIR145-201ENST00000384967 88 ntBASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 SNORD41.1-201ENST00000391000 69 ntBASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 MIR548I2-201ENST00000408348 149 ntBASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 AC108059.2-201ENST00000434626 151 ntBASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 TRAJ51-201ENST00000504127 63 ntBASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 RNU7-2P-201ENST00000516096 62 ntBASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 MIR4802-201ENST00000581881 80 ntBASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 U7.6-201ENST00000610841 64 ntBASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 AL137067.1-201ENST00000615933 120 ntBASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 AP001362.1-201ENST00000625165 124 ntBASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.1□□□□□ -2.43
DDX28Q9NUL7 Y_RNA.144-201ENST00000363521 113 ntBASIC-0.11□□□□□ -2.43
DDX28Q9NUL7 RNU6-1135P-201ENST00000411083 103 ntBASIC-0.11□□□□□ -2.43
DDX28Q9NUL7 Y_RNA.686-201ENST00000516548 134 ntBASIC-0.11□□□□□ -2.43
DDX28Q9NUL7 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-0.11□□□□□ -2.43
DDX28Q9NUL7 RNA5SP98-201ENST00000363158 137 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 SNORD114-31-201ENST00000363219 75 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 Y_RNA.127-201ENST00000363386 109 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 Y_RNA.328-201ENST00000365208 113 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 RNU6-756P-201ENST00000383997 107 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 Y_RNA.441-201ENST00000384123 112 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 Y_RNA.549-201ENST00000384657 102 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 MIR599-201ENST00000385069 95 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 AC097635.1-201ENST00000450678 155 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 RNY4P20-201ENST00000516678 93 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 IGLVI-20-201ENST00000519296 130 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 AC073869.9-201ENST00000641610 120 ntBASIC-0.12□□□□□ -2.43
DDX28Q9NUL7 SNORD115-35-201ENST00000365122 82 ntBASIC-0.13□□□□□ -2.43
DDX28Q9NUL7 RNU6-929P-201ENST00000384429 107 ntBASIC-0.13□□□□□ -2.43
DDX28Q9NUL7 RNU6-1104P-201ENST00000384723 104 ntBASIC-0.13□□□□□ -2.43
DDX28Q9NUL7 SNORA70.25-201ENST00000612741 95 ntBASIC-0.13□□□□□ -2.43
DDX28Q9NUL7 RNU6-161P-201ENST00000363051 106 ntBASIC-0.14□□□□□ -2.43
DDX28Q9NUL7 RNU6-865P-201ENST00000364772 107 ntBASIC-0.14□□□□□ -2.43
DDX28Q9NUL7 RNU6-616P-201ENST00000384353 107 ntBASIC-0.14□□□□□ -2.43
DDX28Q9NUL7 MIR519A1-201ENST00000385257 85 ntBASIC-0.14□□□□□ -2.43
DDX28Q9NUL7 RNU6-269P-201ENST00000391077 97 ntBASIC-0.14□□□□□ -2.43
DDX28Q9NUL7 BX276092.1-201ENST00000427368 251 ntBASIC-0.14□□□□□ -2.43
DDX28Q9NUL7 RNU7-120P-201ENST00000459334 63 ntBASIC-0.14□□□□□ -2.43
DDX28Q9NUL7 Y_RNA.662-201ENST00000516028 97 ntBASIC-0.14□□□□□ -2.43
DDX28Q9NUL7 MIR548AD-201ENST00000584780 82 ntBASIC-0.14□□□□□ -2.43
DDX28Q9NUL7 Y_RNA.188-201ENST00000363952 111 ntBASIC-0.15□□□□□ -2.43
DDX28Q9NUL7 MIR501-201ENST00000390204 84 ntBASIC-0.15□□□□□ -2.43
DDX28Q9NUL7 RNU5E-3P-201ENST00000515913 68 ntBASIC-0.15□□□□□ -2.43
DDX28Q9NUL7 AC108081.1-201ENST00000604358 221 ntBASIC-0.15□□□□□ -2.43
DDX28Q9NUL7 uc_338.28-201ENST00000612082 187 ntBASIC-0.15□□□□□ -2.43
DDX28Q9NUL7 RNU6-200P-201ENST00000364743 107 ntBASIC-0.16□□□□□ -2.44
DDX28Q9NUL7 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.16□□□□□ -2.44
DDX28Q9NUL7 RNU6-1307P-201ENST00000391012 103 ntBASIC-0.16□□□□□ -2.44
DDX28Q9NUL7 RNU6-861P-201ENST00000516745 106 ntBASIC-0.16□□□□□ -2.44
DDX28Q9NUL7 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.16□□□□□ -2.44
DDX28Q9NUL7 RNU6-1271P-201ENST00000517049 105 ntBASIC-0.16□□□□□ -2.44
DDX28Q9NUL7 RNU6-379P-201ENST00000363813 104 ntBASIC-0.17□□□□□ -2.44
DDX28Q9NUL7 Y_RNA.272-201ENST00000364696 102 ntBASIC-0.17□□□□□ -2.44
DDX28Q9NUL7 MIR3121-201ENST00000579680 77 ntBASIC-0.17□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 208.8 ms