Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 SNORD115-6-201ENST00000363942 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-42-201ENST00000364273 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORA1.1-201ENST00000364671 133 ntBASIC0.7□□□□□ -2.3
SHHQ15465 Y_RNA.280-201ENST00000364765 112 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-15-201ENST00000364809 81 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-1-201ENST00000364961 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD114-24-201ENST00000365029 72 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-26-201ENST00000365067 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-10-201ENST00000365073 81 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-43-201ENST00000365503 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-36-201ENST00000365629 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 RNU6-1292P-201ENST00000383856 107 ntBASIC0.7□□□□□ -2.3
SHHQ15465 Y_RNA.470-201ENST00000384307 117 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORA51.10-201ENST00000384418 136 ntBASIC0.7□□□□□ -2.3
SHHQ15465 RNU6-910P-201ENST00000390844 107 ntBASIC0.7□□□□□ -2.3
SHHQ15465 Y_RNA.584-201ENST00000391090 114 ntBASIC0.7□□□□□ -2.3
SHHQ15465 AC245047.7-201ENST00000440265 293 ntBASIC0.7□□□□□ -2.3
SHHQ15465 AL392103.1-201ENST00000447000 198 ntBASIC0.7□□□□□ -2.3
SHHQ15465 RNU6-1211P-201ENST00000459179 105 ntBASIC0.7□□□□□ -2.3
SHHQ15465 RNU6-229P-201ENST00000516614 102 ntBASIC0.7□□□□□ -2.3
SHHQ15465 Y_RNA.703-201ENST00000516846 111 ntBASIC0.7□□□□□ -2.3
SHHQ15465 Y_RNA.714-201ENST00000517065 90 ntBASIC0.7□□□□□ -2.3
SHHQ15465 AC023827.1-201ENST00000569247 97 ntBASIC0.7□□□□□ -2.3
SHHQ15465 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.7□□□□□ -2.3
SHHQ15465 AC131055.1-201ENST00000584626 316 ntBASIC0.7□□□□□ -2.3
SHHQ15465 SNORD115-40-201ENST00000606510 82 ntBASIC0.7□□□□□ -2.3
SHHQ15465 RNU6-94P-201ENST00000607728 107 ntBASIC0.7□□□□□ -2.3
SHHQ15465 AC008163.1-202ENST00000636004 2889 ntBASIC0.7□□□□□ -2.3
SHHQ15465 AL157777.2-201ENST00000258070 137 ntBASIC0.69□□□□□ -2.3
SHHQ15465 Y_RNA.114-201ENST00000363265 113 ntBASIC0.69□□□□□ -2.3
SHHQ15465 RNU6-1335P-201ENST00000365426 107 ntBASIC0.69□□□□□ -2.3
SHHQ15465 SNORA24-201ENST00000384096 131 ntBASIC0.69□□□□□ -2.3
SHHQ15465 RNU6-746P-201ENST00000384112 109 ntBASIC0.69□□□□□ -2.3
SHHQ15465 SNORA40.5-201ENST00000391061 128 ntBASIC0.69□□□□□ -2.3
SHHQ15465 RNU6-322P-201ENST00000516010 103 ntBASIC0.69□□□□□ -2.3
SHHQ15465 SNORD79.1-201ENST00000516069 84 ntBASIC0.69□□□□□ -2.3
SHHQ15465 MIR3121-201ENST00000579680 77 ntBASIC0.69□□□□□ -2.3
SHHQ15465 MIR8055-201ENST00000610739 97 ntBASIC0.69□□□□□ -2.3
SHHQ15465 AL365222.1-201ENST00000614661 98 ntBASIC0.69□□□□□ -2.3
SHHQ15465 MIR6740-201ENST00000618268 113 ntBASIC0.69□□□□□ -2.3
SHHQ15465 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
SHHQ15465 HSBP1P2-201ENST00000299671 229 ntBASIC0.68□□□□□ -2.3
SHHQ15465 RNA5SP264-201ENST00000363115 107 ntBASIC0.68□□□□□ -2.3
SHHQ15465 Y_RNA.330-201ENST00000365230 109 ntBASIC0.68□□□□□ -2.3
SHHQ15465 RNY1P5-201ENST00000383890 115 ntBASIC0.68□□□□□ -2.3
SHHQ15465 SNORA80D-201ENST00000384488 135 ntBASIC0.68□□□□□ -2.3
SHHQ15465 RNU6-1237P-201ENST00000384777 107 ntBASIC0.68□□□□□ -2.3
SHHQ15465 RNU6-1307P-201ENST00000391012 103 ntBASIC0.68□□□□□ -2.3
SHHQ15465 RNU6-602P-201ENST00000411155 105 ntBASIC0.68□□□□□ -2.3
SHHQ15465 MIR6717-201ENST00000622747 73 ntBASIC0.68□□□□□ -2.3
SHHQ15465 MIR103A2-201ENST00000362154 78 ntBASIC0.67□□□□□ -2.3
SHHQ15465 Y_RNA.410-201ENST00000383992 113 ntBASIC0.67□□□□□ -2.3
SHHQ15465 SNORA32-201ENST00000384072 121 ntBASIC0.67□□□□□ -2.3
SHHQ15465 MIR548M-201ENST00000408260 86 ntBASIC0.67□□□□□ -2.3
SHHQ15465 AL606490.4-201ENST00000423117 127 ntBASIC0.67□□□□□ -2.3
SHHQ15465 AL035398.1-201ENST00000430869 322 ntBASIC0.67□□□□□ -2.3
SHHQ15465 AC087499.4-201ENST00000448505 178 ntBASIC0.67□□□□□ -2.3
SHHQ15465 RNU7-123P-201ENST00000515911 60 ntBASIC0.67□□□□□ -2.3
SHHQ15465 RNU7-43P-201ENST00000516554 64 ntBASIC0.67□□□□□ -2.3
SHHQ15465 Y_RNA.757-201ENST00000578934 114 ntBASIC0.67□□□□□ -2.3
SHHQ15465 MIR3910-1-201ENST00000580936 111 ntBASIC0.67□□□□□ -2.3
SHHQ15465 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
SHHQ15465 U2.22-201ENST00000636441 106 ntBASIC0.67□□□□□ -2.3
SHHQ15465 MIR6086-201ENST00000638065 55 ntBASIC0.67□□□□□ -2.3
SHHQ15465 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.66□□□□□ -2.3
SHHQ15465 RNU6-369P-201ENST00000362515 102 ntBASIC0.66□□□□□ -2.3
SHHQ15465 RNU6-704P-201ENST00000364162 103 ntBASIC0.66□□□□□ -2.3
SHHQ15465 SNORA26-201ENST00000391286 122 ntBASIC0.66□□□□□ -2.3
SHHQ15465 MIR513C-201ENST00000401352 84 ntBASIC0.66□□□□□ -2.3
SHHQ15465 AL603908.1-201ENST00000406098 201 ntBASIC0.66□□□□□ -2.3
SHHQ15465 RNA5SP144-201ENST00000410846 116 ntBASIC0.66□□□□□ -2.3
SHHQ15465 SNORD83.1-201ENST00000411362 77 ntBASIC0.66□□□□□ -2.3
SHHQ15465 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.66□□□□□ -2.3
SHHQ15465 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.66□□□□□ -2.3
SHHQ15465 SNORD124-201ENST00000459577 104 ntBASIC0.66□□□□□ -2.3
SHHQ15465 PDCD5P2-201ENST00000507570 312 ntBASIC0.66□□□□□ -2.3
SHHQ15465 RNU6-126P-201ENST00000516685 103 ntBASIC0.66□□□□□ -2.3
SHHQ15465 AP001328.1-201ENST00000528550 176 ntBASIC0.66□□□□□ -2.3
SHHQ15465 MIR3646-201ENST00000578301 84 ntBASIC0.66□□□□□ -2.3
SHHQ15465 AC021613.1-201ENST00000623880 111 ntBASIC0.66□□□□□ -2.3
SHHQ15465 MIR5087-201ENST00000635826 76 ntBASIC0.66□□□□□ -2.3
SHHQ15465 MIR6841-201ENST00000637129 72 ntBASIC0.66□□□□□ -2.3
SHHQ15465 AC023934.1-201ENST00000574529 2389 ntBASIC0.65□□□□□ -2.3
SHHQ15465 Y_RNA.71-201ENST00000362892 104 ntBASIC0.65□□□□□ -2.31
SHHQ15465 Y_RNA.120-201ENST00000363304 110 ntBASIC0.65□□□□□ -2.31
SHHQ15465 RNU6-690P-201ENST00000365242 106 ntBASIC0.65□□□□□ -2.31
SHHQ15465 Y_RNA.537-201ENST00000384626 109 ntBASIC0.65□□□□□ -2.31
SHHQ15465 SNORA19-201ENST00000384737 128 ntBASIC0.65□□□□□ -2.31
SHHQ15465 MIR1263-201ENST00000408324 86 ntBASIC0.65□□□□□ -2.31
SHHQ15465 AC096949.1-201ENST00000412047 152 ntBASIC0.65□□□□□ -2.31
SHHQ15465 AC002429.1-201ENST00000437672 148 ntBASIC0.65□□□□□ -2.31
SHHQ15465 RNU7-73P-201ENST00000458743 63 ntBASIC0.65□□□□□ -2.31
SHHQ15465 RNU7-96P-201ENST00000459535 64 ntBASIC0.65□□□□□ -2.31
SHHQ15465 RN7SKP19-201ENST00000516016 252 ntBASIC0.65□□□□□ -2.31
SHHQ15465 ACA64.5-201ENST00000516207 127 ntBASIC0.65□□□□□ -2.31
SHHQ15465 RNY4P20-201ENST00000516678 93 ntBASIC0.65□□□□□ -2.31
SHHQ15465 AL359881.1-201ENST00000602916 267 ntBASIC0.65□□□□□ -2.31
SHHQ15465 AC011603.4-201ENST00000611325 277 ntBASIC0.65□□□□□ -2.31
SHHQ15465 AC106800.4-201ENST00000614905 153 ntBASIC0.65□□□□□ -2.31
SHHQ15465 Z97988.1-201ENST00000637697 135 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms