Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Gm11779-201ENSMUST00000118541 368 ntBASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Mir6404-201ENSMUST00000183699 94 ntBASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 AV026068-213ENSMUST00000223675 1171 ntBASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 AC154222.1-201ENSMUST00000223882 475 ntBASIC17.28■□□□□ 0.36
Trim54Q9ERP3 AC159093.1-201ENSMUST00000227779 380 ntBASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim54Q9ERP3 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Gm5264-201ENSMUST00000190584 848 ntBASIC17.27■□□□□ 0.36
Trim54Q9ERP3 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim54Q9ERP3 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim54Q9ERP3 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim54Q9ERP3 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim54Q9ERP3 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Trim54Q9ERP3 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim54Q9ERP3 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Trim54Q9ERP3 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim54Q9ERP3 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim54Q9ERP3 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Gm27628-201ENSMUST00000184911 107 ntBASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Gm43073-201ENSMUST00000198200 1189 ntBASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim54Q9ERP3 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms