Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Scn4aQ9ER60 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Scn4aQ9ER60 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Scn4aQ9ER60 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Scn4aQ9ER60 Gm18018-201ENSMUST00000198273 408 ntBASIC21.77■■□□□ 1.08
Scn4aQ9ER60 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Scn4aQ9ER60 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Scn4aQ9ER60 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Scn4aQ9ER60 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
Scn4aQ9ER60 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC21.77■■□□□ 1.07
Scn4aQ9ER60 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Scn4aQ9ER60 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scn4aQ9ER60 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scn4aQ9ER60 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scn4aQ9ER60 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scn4aQ9ER60 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Scn4aQ9ER60 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Scn4aQ9ER60 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scn4aQ9ER60 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC21.74■■□□□ 1.07
Scn4aQ9ER60 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scn4aQ9ER60 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Scn4aQ9ER60 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scn4aQ9ER60 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scn4aQ9ER60 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scn4aQ9ER60 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Scn4aQ9ER60 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Scn4aQ9ER60 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scn4aQ9ER60 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scn4aQ9ER60 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Scn4aQ9ER60 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Gm17150-201ENSMUST00000165577 381 ntBASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Gm15824-201ENSMUST00000119516 955 ntBASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Gm6257-201ENSMUST00000163864 910 ntBASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Scn4aQ9ER60 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scn4aQ9ER60 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scn4aQ9ER60 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scn4aQ9ER60 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Scn4aQ9ER60 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Scn4aQ9ER60 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scn4aQ9ER60 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scn4aQ9ER60 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scn4aQ9ER60 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scn4aQ9ER60 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Gm18737-201ENSMUST00000173594 937 ntBASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Gm8116-201ENSMUST00000182917 1201 ntBASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Gm5828-201ENSMUST00000071842 1860 ntBASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Ldb3-207ENSMUST00000227819 1499 ntBASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Gm11425-201ENSMUST00000119608 498 ntBASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Gm9396-201ENSMUST00000076703 567 ntBASIC21.71■■□□□ 1.07
Scn4aQ9ER60 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 73.6 ms