Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Limch1Q3UH68 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Limch1Q3UH68 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Limch1Q3UH68 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Limch1Q3UH68 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC18.83■□□□□ 0.61
Limch1Q3UH68 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Limch1Q3UH68 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Limch1Q3UH68 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Limch1Q3UH68 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Limch1Q3UH68 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Limch1Q3UH68 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Limch1Q3UH68 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 AC164629.2-201ENSMUST00000217916 270 ntBASIC18.82■□□□□ 0.6
Limch1Q3UH68 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Limch1Q3UH68 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Limch1Q3UH68 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Limch1Q3UH68 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Limch1Q3UH68 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC18.81■□□□□ 0.6
Limch1Q3UH68 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Limch1Q3UH68 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC18.81■□□□□ 0.6
Limch1Q3UH68 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Limch1Q3UH68 Gm28659-201ENSMUST00000188013 759 ntBASIC18.81■□□□□ 0.6
Limch1Q3UH68 AC124569.2-201ENSMUST00000225998 818 ntBASIC18.81■□□□□ 0.6
Limch1Q3UH68 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Limch1Q3UH68 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Limch1Q3UH68 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Limch1Q3UH68 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Limch1Q3UH68 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Limch1Q3UH68 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC18.8■□□□□ 0.6
Limch1Q3UH68 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Limch1Q3UH68 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Limch1Q3UH68 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Limch1Q3UH68 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Limch1Q3UH68 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Limch1Q3UH68 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC18.8■□□□□ 0.6
Limch1Q3UH68 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Limch1Q3UH68 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Limch1Q3UH68 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Gm27459-201ENSMUST00000184860 107 ntBASIC18.79■□□□□ 0.6
Limch1Q3UH68 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Limch1Q3UH68 Ntrk2-205ENSMUST00000224402 2284 ntBASIC18.79■□□□□ 0.6
Limch1Q3UH68 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Limch1Q3UH68 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC18.78■□□□□ 0.6
Limch1Q3UH68 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC18.78■□□□□ 0.6
Limch1Q3UH68 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Limch1Q3UH68 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Limch1Q3UH68 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Limch1Q3UH68 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Limch1Q3UH68 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Limch1Q3UH68 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms