Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm7729-201ENSMUST00000050143 801 ntBASIC17.62■□□□□ 0.41
Hmgb1P63158 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Hmgb1P63158 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Hmgb1P63158 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
Hmgb1P63158 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Hmgb1P63158 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb1P63158 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb1P63158 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb1P63158 AC132265.1-201ENSMUST00000219233 1665 ntBASIC17.61■□□□□ 0.41
Hmgb1P63158 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb1P63158 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb1P63158 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb1P63158 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb1P63158 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Hmgb1P63158 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC17.61■□□□□ 0.41
Hmgb1P63158 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.61■□□□□ 0.41
Hmgb1P63158 Gm10252-201ENSMUST00000209541 832 ntBASIC17.61■□□□□ 0.41
Hmgb1P63158 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC17.61■□□□□ 0.41
Hmgb1P63158 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb1P63158 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb1P63158 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.61■□□□□ 0.41
Hmgb1P63158 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb1P63158 Prob1-201ENSMUST00000097619 3021 ntBASIC17.61■□□□□ 0.41
Hmgb1P63158 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb1P63158 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Hmgb1P63158 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Hmgb1P63158 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb1P63158 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb1P63158 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb1P63158 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb1P63158 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb1P63158 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb1P63158 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
Hmgb1P63158 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Hmgb1P63158 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Hmgb1P63158 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.6■□□□□ 0.41
Hmgb1P63158 Mir6982-201ENSMUST00000184354 68 ntBASIC17.6■□□□□ 0.41
Hmgb1P63158 Gm18032-201ENSMUST00000222541 538 ntBASIC17.6■□□□□ 0.41
Hmgb1P63158 Gm6858-201ENSMUST00000208582 1468 ntBASIC17.6■□□□□ 0.41
Hmgb1P63158 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb1P63158 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb1P63158 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb1P63158 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb1P63158 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb1P63158 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Hmgb1P63158 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Hmgb1P63158 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Gm44616-201ENSMUST00000206417 1732 ntBASIC17.59■□□□□ 0.41
Hmgb1P63158 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Hmgb1P63158 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
Hmgb1P63158 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC17.59■□□□□ 0.41
Hmgb1P63158 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Hmgb1P63158 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Hmgb1P63158 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.59■□□□□ 0.41
Hmgb1P63158 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Hmgb1P63158 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Hmgb1P63158 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Hmgb1P63158 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.58■□□□□ 0.41
Hmgb1P63158 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC17.58■□□□□ 0.41
Hmgb1P63158 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Hmgb1P63158 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Hmgb1P63158 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb1P63158 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb1P63158 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC17.58■□□□□ 0.4
Hmgb1P63158 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Hmgb1P63158 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb1P63158 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Hmgb1P63158 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb1P63158 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC17.58■□□□□ 0.4
Hmgb1P63158 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb1P63158 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb1P63158 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Hmgb1P63158 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb1P63158 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Hmgb1P63158 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb1P63158 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb1P63158 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Hmgb1P63158 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms