Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Msx1P13297 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC15.15■□□□□ 0.02
Msx1P13297 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC15.15■□□□□ 0.02
Msx1P13297 Gm13830-205ENSMUST00000201195 1155 ntBASIC15.15■□□□□ 0.02
Msx1P13297 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC15.15■□□□□ 0.02
Msx1P13297 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC15.15■□□□□ 0.02
Msx1P13297 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
Msx1P13297 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msx1P13297 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC15.14■□□□□ 0.01
Msx1P13297 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC15.14■□□□□ 0.01
Msx1P13297 Gm43332-201ENSMUST00000202511 1044 ntBASIC15.14■□□□□ 0.01
Msx1P13297 Gm10060-201ENSMUST00000212002 111 ntBASIC15.14■□□□□ 0.01
Msx1P13297 AC160338.1-201ENSMUST00000214232 705 ntBASIC15.14■□□□□ 0.01
Msx1P13297 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Msx1P13297 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
Msx1P13297 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msx1P13297 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Msx1P13297 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC15.13■□□□□ 0.01
Msx1P13297 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Msx1P13297 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC15.13■□□□□ 0.01
Msx1P13297 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Gm15165-201ENSMUST00000118140 502 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC15.13■□□□□ 0.01
Msx1P13297 Gm44357-201ENSMUST00000195897 142 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Gm19658-201ENSMUST00000196231 138 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Gm44367-201ENSMUST00000196836 138 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Gm44350-201ENSMUST00000197197 138 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Gm44390-201ENSMUST00000197533 144 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Gm44313-201ENSMUST00000198018 138 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Gm44486-201ENSMUST00000198508 138 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Gm44454-201ENSMUST00000198541 138 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Gm44314-201ENSMUST00000199263 138 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Gm44394-201ENSMUST00000199558 138 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Gm44484-201ENSMUST00000199873 138 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Gm44466-201ENSMUST00000200264 138 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Gm44359-201ENSMUST00000200671 138 ntBASIC15.13■□□□□ 0.01
Msx1P13297 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC15.13■□□□□ 0.01
Msx1P13297 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC15.13■□□□□ 0.01
Msx1P13297 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC15.13■□□□□ 0.01
Msx1P13297 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Msx1P13297 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Msx1P13297 AC115863.1-201ENSMUST00000214815 1813 ntBASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms