Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
RaraP11416 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RaraP11416 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
RaraP11416 Gm10252-201ENSMUST00000209541 832 ntBASIC17.33■□□□□ 0.36
RaraP11416 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RaraP11416 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RaraP11416 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RaraP11416 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RaraP11416 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC17.33■□□□□ 0.36
RaraP11416 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RaraP11416 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
RaraP11416 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
RaraP11416 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RaraP11416 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RaraP11416 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RaraP11416 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RaraP11416 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RaraP11416 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RaraP11416 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
RaraP11416 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RaraP11416 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
RaraP11416 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.32■□□□□ 0.36
RaraP11416 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
RaraP11416 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RaraP11416 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Gm22697-201ENSMUST00000175194 63 ntBASIC17.32■□□□□ 0.36
RaraP11416 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
RaraP11416 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.32■□□□□ 0.36
RaraP11416 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.32■□□□□ 0.36
RaraP11416 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
RaraP11416 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
RaraP11416 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC17.32■□□□□ 0.36
RaraP11416 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
RaraP11416 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RaraP11416 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
RaraP11416 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
RaraP11416 AC163637.1-201ENSMUST00000215491 1894 ntBASIC17.31■□□□□ 0.36
RaraP11416 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
RaraP11416 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RaraP11416 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RaraP11416 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RaraP11416 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
RaraP11416 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
RaraP11416 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RaraP11416 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RaraP11416 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RaraP11416 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RaraP11416 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
RaraP11416 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RaraP11416 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
RaraP11416 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
RaraP11416 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RaraP11416 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.3■□□□□ 0.36
RaraP11416 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RaraP11416 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RaraP11416 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RaraP11416 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
RaraP11416 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
RaraP11416 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
RaraP11416 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.3■□□□□ 0.36
RaraP11416 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
RaraP11416 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC17.3■□□□□ 0.36
RaraP11416 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC17.3■□□□□ 0.36
RaraP11416 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RaraP11416 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RaraP11416 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
RaraP11416 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
RaraP11416 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RaraP11416 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RaraP11416 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
RaraP11416 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RaraP11416 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RaraP11416 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RaraP11416 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
RaraP11416 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RaraP11416 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RaraP11416 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
RaraP11416 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RaraP11416 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RaraP11416 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
RaraP11416 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms