Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Hoxd3P09027 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Gm20628-201ENSMUST00000177363 3215 ntBASIC12.43□□□□□ -0.42
Hoxd3P09027 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
Hoxd3P09027 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Hoxd3P09027 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
Hoxd3P09027 Gm11452-201ENSMUST00000122376 690 ntBASIC12.43□□□□□ -0.42
Hoxd3P09027 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Gm25745-201ENSMUST00000174945 133 ntBASIC12.43□□□□□ -0.42
Hoxd3P09027 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC12.43□□□□□ -0.42
Hoxd3P09027 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC12.43□□□□□ -0.42
Hoxd3P09027 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Hoxd3P09027 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Hoxd3P09027 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hoxd3P09027 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Hoxd3P09027 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC12.42□□□□□ -0.42
Hoxd3P09027 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Gm8839-201ENSMUST00000121279 1645 ntBASIC12.42□□□□□ -0.42
Hoxd3P09027 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC12.42□□□□□ -0.42
Hoxd3P09027 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC12.42□□□□□ -0.42
Hoxd3P09027 AC160338.1-201ENSMUST00000214232 705 ntBASIC12.42□□□□□ -0.42
Hoxd3P09027 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC12.42□□□□□ -0.42
Hoxd3P09027 Rps4l-201ENSMUST00000071745 943 ntBASIC12.42□□□□□ -0.42
Hoxd3P09027 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Hoxd3P09027 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC12.42□□□□□ -0.42
Hoxd3P09027 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hoxd3P09027 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Hoxd3P09027 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC12.42□□□□□ -0.42
Hoxd3P09027 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC12.42□□□□□ -0.42
Hoxd3P09027 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Hoxd3P09027 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Gm13830-205ENSMUST00000201195 1155 ntBASIC12.41□□□□□ -0.42
Hoxd3P09027 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Hoxd3P09027 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC12.41□□□□□ -0.42
Hoxd3P09027 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Hoxd3P09027 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms