Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Chd3B1AR17 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Chd3B1AR17 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Chd3B1AR17 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Chd3B1AR17 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Chd3B1AR17 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Chd3B1AR17 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC15.64■□□□□ 0.09
Chd3B1AR17 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC15.64■□□□□ 0.09
Chd3B1AR17 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Chd3B1AR17 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
Chd3B1AR17 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Chd3B1AR17 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Chd3B1AR17 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Chd3B1AR17 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Chd3B1AR17 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Chd3B1AR17 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC15.64■□□□□ 0.09
Chd3B1AR17 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Gm45244-201ENSMUST00000211328 2200 ntBASIC15.63■□□□□ 0.09
Chd3B1AR17 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Chd3B1AR17 Gm6184-201ENSMUST00000120403 1261 ntBASIC15.63■□□□□ 0.09
Chd3B1AR17 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC15.63■□□□□ 0.09
Chd3B1AR17 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Chd3B1AR17 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Chd3B1AR17 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Chd3B1AR17 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 AC154527.4-201ENSMUST00000224364 1667 ntBASIC15.63■□□□□ 0.09
Chd3B1AR17 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC15.63■□□□□ 0.09
Chd3B1AR17 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC15.63■□□□□ 0.09
Chd3B1AR17 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Chd3B1AR17 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Chd3B1AR17 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Chd3B1AR17 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Chd3B1AR17 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
Chd3B1AR17 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 AC122901.1-201ENSMUST00000214203 1790 ntBASIC15.62■□□□□ 0.09
Chd3B1AR17 Gm1401-201ENSMUST00000122048 772 ntBASIC15.62■□□□□ 0.09
Chd3B1AR17 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC15.62■□□□□ 0.09
Chd3B1AR17 Gm43935-201ENSMUST00000203569 1050 ntBASIC15.62■□□□□ 0.09
Chd3B1AR17 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC15.62■□□□□ 0.09
Chd3B1AR17 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
Chd3B1AR17 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Chd3B1AR17 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
Chd3B1AR17 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC15.62■□□□□ 0.09
Chd3B1AR17 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Gm11764-201ENSMUST00000120221 623 ntBASIC15.61■□□□□ 0.09
Chd3B1AR17 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC15.61■□□□□ 0.09
Chd3B1AR17 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC15.61■□□□□ 0.09
Chd3B1AR17 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Chd3B1AR17 Gm7862-201ENSMUST00000121461 292 ntBASIC15.61■□□□□ 0.09
Chd3B1AR17 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
Chd3B1AR17 Gm43514-201ENSMUST00000198852 424 ntBASIC15.61■□□□□ 0.09
Chd3B1AR17 Psmb5-202ENSMUST00000227257 622 ntBASIC15.61■□□□□ 0.09
Chd3B1AR17 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Chd3B1AR17 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms