Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Pcdhgb8A0A140LI48 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Spsb2-203ENSMUST00000112473 1322 ntBASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 AA414768-201ENSMUST00000121924 1257 ntBASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Gm27389-201ENSMUST00000183622 195 ntBASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Gm7370-201ENSMUST00000219471 767 ntBASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Pcdhgb8A0A140LI48 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Gm25016-201ENSMUST00000158399 131 ntBASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Pcdhgb8A0A140LI48 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Gm6728-201ENSMUST00000178117 1065 ntBASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Asic1-205ENSMUST00000228185 1818 ntBASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Gm19721-201ENSMUST00000195284 1764 ntBASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Pcdhgb8A0A140LI48 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Pcdhgb8A0A140LI48 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC14.48□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms