Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC242498.1-201ENST00000604134 111 ntBASIC0.97□□□□□ -2.25
COL28A1Q2UY09 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.97□□□□□ -2.25
COL28A1Q2UY09 MIR6513-201ENST00000621188 64 ntBASIC0.97□□□□□ -2.25
COL28A1Q2UY09 MIR6717-201ENST00000622747 73 ntBASIC0.97□□□□□ -2.25
COL28A1Q2UY09 SNORA75.5-201ENST00000391291 81 ntBASIC0.96□□□□□ -2.26
COL28A1Q2UY09 MIR942-201ENST00000401111 86 ntBASIC0.96□□□□□ -2.26
COL28A1Q2UY09 RNA5SP95-201ENST00000410319 137 ntBASIC0.96□□□□□ -2.26
COL28A1Q2UY09 RNU6-1135P-201ENST00000411083 103 ntBASIC0.96□□□□□ -2.26
COL28A1Q2UY09 RNU6-602P-201ENST00000411155 105 ntBASIC0.96□□□□□ -2.26
COL28A1Q2UY09 Y_RNA.662-201ENST00000516028 97 ntBASIC0.96□□□□□ -2.26
COL28A1Q2UY09 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.96□□□□□ -2.26
COL28A1Q2UY09 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.96□□□□□ -2.26
COL28A1Q2UY09 SNORD114-21-201ENST00000606412 72 ntBASIC0.96□□□□□ -2.26
COL28A1Q2UY09 MIR6857-201ENST00000613267 93 ntBASIC0.96□□□□□ -2.26
COL28A1Q2UY09 AC004792.1-201ENST00000614523 137 ntBASIC0.96□□□□□ -2.26
COL28A1Q2UY09 MIR342-201ENST00000362212 99 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 RNU6-1318P-201ENST00000365389 103 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 RNU6-1319P-201ENST00000390855 104 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 RNU6-747P-201ENST00000390928 104 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 RNU6-241P-201ENST00000391148 104 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 MIR936-201ENST00000401264 98 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 RNU6-177P-201ENST00000411257 104 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 RPS3AP1-201ENST00000413190 320 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 U7.7-201ENST00000459276 60 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 RNA5SP255-201ENST00000516370 107 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 RNU6-1110P-201ENST00000516462 101 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 RNU6-861P-201ENST00000516745 106 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 RNU6-1149P-201ENST00000516810 97 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 RNU6-794P-201ENST00000517261 64 ntBASIC0.95□□□□□ -2.26
COL28A1Q2UY09 RNU6-1190P-201ENST00000410811 104 ntBASIC0.94□□□□□ -2.26
COL28A1Q2UY09 RNU5E-9P-201ENST00000411164 104 ntBASIC0.94□□□□□ -2.26
COL28A1Q2UY09 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.94□□□□□ -2.26
COL28A1Q2UY09 AC067940.1-201ENST00000458411 300 ntBASIC0.94□□□□□ -2.26
COL28A1Q2UY09 PDCD5P2-201ENST00000507570 312 ntBASIC0.94□□□□□ -2.26
COL28A1Q2UY09 RNU7-70P-201ENST00000516941 66 ntBASIC0.94□□□□□ -2.26
COL28A1Q2UY09 MIR3152-201ENST00000579801 74 ntBASIC0.94□□□□□ -2.26
COL28A1Q2UY09 RNU6-94P-201ENST00000607728 107 ntBASIC0.94□□□□□ -2.26
COL28A1Q2UY09 AL596211.1-201ENST00000569873 2277 ntBASIC0.93□□□□□ -2.26
COL28A1Q2UY09 MIR532-201ENST00000385025 91 ntBASIC0.93□□□□□ -2.26
COL28A1Q2UY09 MIR1827-201ENST00000408549 66 ntBASIC0.93□□□□□ -2.26
COL28A1Q2UY09 RNU6-994P-201ENST00000410507 111 ntBASIC0.93□□□□□ -2.26
COL28A1Q2UY09 RNU6-182P-201ENST00000516970 105 ntBASIC0.93□□□□□ -2.26
COL28A1Q2UY09 MIR4698-201ENST00000577795 80 ntBASIC0.93□□□□□ -2.26
COL28A1Q2UY09 AL136317.1-201ENST00000612653 226 ntBASIC0.93□□□□□ -2.26
COL28A1Q2UY09 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
COL28A1Q2UY09 MTND5P32-201ENST00000560711 1802 ntBASIC0.92□□□□□ -2.26
COL28A1Q2UY09 Y_RNA.52-201ENST00000362760 96 ntBASIC0.92□□□□□ -2.26
COL28A1Q2UY09 RNU6-1082P-201ENST00000364574 107 ntBASIC0.92□□□□□ -2.26
COL28A1Q2UY09 Y_RNA.294-201ENST00000364916 102 ntBASIC0.92□□□□□ -2.26
COL28A1Q2UY09 RNU1-36P-201ENST00000365130 165 ntBASIC0.92□□□□□ -2.26
COL28A1Q2UY09 RNU6-205P-201ENST00000390858 107 ntBASIC0.92□□□□□ -2.26
COL28A1Q2UY09 RNU7-62P-201ENST00000458856 62 ntBASIC0.92□□□□□ -2.26
COL28A1Q2UY09 snoU13.2-201ENST00000459201 104 ntBASIC0.92□□□□□ -2.26
COL28A1Q2UY09 AC025627.3-201ENST00000582078 182 ntBASIC0.92□□□□□ -2.26
COL28A1Q2UY09 MIR6841-201ENST00000637129 72 ntBASIC0.92□□□□□ -2.26
COL28A1Q2UY09 RNU4-38P-201ENST00000364472 129 ntBASIC0.91□□□□□ -2.26
COL28A1Q2UY09 RNU6-818P-201ENST00000364837 108 ntBASIC0.91□□□□□ -2.26
COL28A1Q2UY09 MIR563-201ENST00000385080 79 ntBASIC0.91□□□□□ -2.26
COL28A1Q2UY09 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.91□□□□□ -2.26
COL28A1Q2UY09 MIR1197-201ENST00000408818 88 ntBASIC0.91□□□□□ -2.26
COL28A1Q2UY09 RNA5SP236-201ENST00000516169 116 ntBASIC0.91□□□□□ -2.26
COL28A1Q2UY09 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.91□□□□□ -2.26
COL28A1Q2UY09 DNAJC19P2-201ENST00000593340 302 ntBASIC0.91□□□□□ -2.26
COL28A1Q2UY09 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.91□□□□□ -2.26
COL28A1Q2UY09 AC021613.1-201ENST00000623880 111 ntBASIC0.91□□□□□ -2.26
COL28A1Q2UY09 MIR6844-201ENST00000637122 62 ntBASIC0.91□□□□□ -2.26
COL28A1Q2UY09 MIR6086-201ENST00000638065 55 ntBASIC0.91□□□□□ -2.26
COL28A1Q2UY09 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.91□□□□□ -2.26
COL28A1Q2UY09 MIR330-201ENST00000362196 94 ntBASIC0.9□□□□□ -2.27
COL28A1Q2UY09 RNU6-1187P-201ENST00000364771 110 ntBASIC0.9□□□□□ -2.27
COL28A1Q2UY09 SNORA20-201ENST00000384662 132 ntBASIC0.9□□□□□ -2.27
COL28A1Q2UY09 MTND5P15-201ENST00000434246 349 ntBASIC0.9□□□□□ -2.27
COL28A1Q2UY09 MIR18B-201ENST00000454574 71 ntBASIC0.9□□□□□ -2.27
COL28A1Q2UY09 RNU6-893P-201ENST00000458841 100 ntBASIC0.9□□□□□ -2.27
COL28A1Q2UY09 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.9□□□□□ -2.27
COL28A1Q2UY09 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.9□□□□□ -2.27
COL28A1Q2UY09 MIR6740-201ENST00000618268 113 ntBASIC0.9□□□□□ -2.27
COL28A1Q2UY09 RNU6-1336P-201ENST00000383886 109 ntBASIC0.89□□□□□ -2.27
COL28A1Q2UY09 RNU2-64P-201ENST00000411315 191 ntBASIC0.89□□□□□ -2.27
COL28A1Q2UY09 RNU7-45P-201ENST00000459460 63 ntBASIC0.89□□□□□ -2.27
COL28A1Q2UY09 MIR1-1-201ENST00000362147 71 ntBASIC0.88□□□□□ -2.27
COL28A1Q2UY09 RNU6-369P-201ENST00000362515 102 ntBASIC0.88□□□□□ -2.27
COL28A1Q2UY09 Y_RNA.272-201ENST00000364696 102 ntBASIC0.88□□□□□ -2.27
COL28A1Q2UY09 RNY1P6-201ENST00000384193 109 ntBASIC0.88□□□□□ -2.27
COL28A1Q2UY09 MIR588-201ENST00000384900 83 ntBASIC0.88□□□□□ -2.27
COL28A1Q2UY09 RPS26P5-201ENST00000418544 335 ntBASIC0.88□□□□□ -2.27
COL28A1Q2UY09 AC011603.4-201ENST00000611325 277 ntBASIC0.88□□□□□ -2.27
COL28A1Q2UY09 FTX_2.1-201ENST00000618816 94 ntBASIC0.88□□□□□ -2.27
COL28A1Q2UY09 RNU6-934P-201ENST00000365154 107 ntBASIC0.87□□□□□ -2.27
COL28A1Q2UY09 Y_RNA.497-201ENST00000384447 98 ntBASIC0.87□□□□□ -2.27
COL28A1Q2UY09 MT-TF-201ENST00000387314 71 ntBASIC0.87□□□□□ -2.27
COL28A1Q2UY09 SNORD89-201ENST00000390981 114 ntBASIC0.87□□□□□ -2.27
COL28A1Q2UY09 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.87□□□□□ -2.27
COL28A1Q2UY09 RNU6-1165P-201ENST00000410119 107 ntBASIC0.87□□□□□ -2.27
COL28A1Q2UY09 MTATP6P21-201ENST00000440681 189 ntBASIC0.87□□□□□ -2.27
COL28A1Q2UY09 AC113410.1-201ENST00000505029 247 ntBASIC0.87□□□□□ -2.27
COL28A1Q2UY09 AC133485.1-201ENST00000567176 124 ntBASIC0.87□□□□□ -2.27
COL28A1Q2UY09 AC138907.6-201ENST00000568401 126 ntBASIC0.87□□□□□ -2.27
COL28A1Q2UY09 RNU6-349P-201ENST00000362402 107 ntBASIC0.86□□□□□ -2.27
COL28A1Q2UY09 SNORA22.1-201ENST00000362701 134 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 260.2 ms