Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 MIR4431-201ENST00000579990 94 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 MIR8055-201ENST00000610739 97 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 Z97988.1-201ENST00000637697 135 ntBASIC0.68□□□□□ -2.3
TNFRSF4P43489 RNU6-1336P-201ENST00000383886 109 ntBASIC0.67□□□□□ -2.3
TNFRSF4P43489 RNU6-110P-201ENST00000384508 104 ntBASIC0.67□□□□□ -2.3
TNFRSF4P43489 SNORD99-201ENST00000408612 74 ntBASIC0.67□□□□□ -2.3
TNFRSF4P43489 RNU6-602P-201ENST00000411155 105 ntBASIC0.67□□□□□ -2.3
TNFRSF4P43489 AL606490.4-201ENST00000423117 127 ntBASIC0.67□□□□□ -2.3
TNFRSF4P43489 AC244023.1-201ENST00000426884 112 ntBASIC0.67□□□□□ -2.3
TNFRSF4P43489 AC107027.2-201ENST00000512197 115 ntBASIC0.67□□□□□ -2.3
TNFRSF4P43489 AC242498.1-201ENST00000604134 111 ntBASIC0.67□□□□□ -2.3
TNFRSF4P43489 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
TNFRSF4P43489 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.66□□□□□ -2.3
TNFRSF4P43489 MIR1-1-201ENST00000362147 71 ntBASIC0.66□□□□□ -2.3
TNFRSF4P43489 RNA5SP347-201ENST00000362445 119 ntBASIC0.66□□□□□ -2.3
TNFRSF4P43489 SNORA20-201ENST00000384662 132 ntBASIC0.66□□□□□ -2.3
TNFRSF4P43489 MIR624-201ENST00000385217 97 ntBASIC0.66□□□□□ -2.3
TNFRSF4P43489 RNA5SP261-201ENST00000410536 106 ntBASIC0.66□□□□□ -2.3
TNFRSF4P43489 SNORD83.1-201ENST00000411362 77 ntBASIC0.66□□□□□ -2.3
TNFRSF4P43489 snoU13.21-201ENST00000459368 105 ntBASIC0.66□□□□□ -2.3
TNFRSF4P43489 RNU6-138P-201ENST00000515952 107 ntBASIC0.66□□□□□ -2.3
TNFRSF4P43489 RNU6-1149P-201ENST00000516810 97 ntBASIC0.66□□□□□ -2.3
TNFRSF4P43489 AC072026.1-201ENST00000605023 201 ntBASIC0.66□□□□□ -2.3
TNFRSF4P43489 AC023934.1-201ENST00000574529 2389 ntBASIC0.65□□□□□ -2.3
TNFRSF4P43489 RNU6-312P-201ENST00000364629 107 ntBASIC0.65□□□□□ -2.31
TNFRSF4P43489 RNU6-200P-201ENST00000364743 107 ntBASIC0.65□□□□□ -2.31
TNFRSF4P43489 RNU6-934P-201ENST00000365154 107 ntBASIC0.65□□□□□ -2.31
TNFRSF4P43489 Y_RNA.357-201ENST00000365487 109 ntBASIC0.65□□□□□ -2.31
TNFRSF4P43489 RNU6-768P-201ENST00000384683 107 ntBASIC0.65□□□□□ -2.31
TNFRSF4P43489 AC015818.7-201ENST00000428754 109 ntBASIC0.65□□□□□ -2.31
TNFRSF4P43489 AC087499.7-201ENST00000441958 109 ntBASIC0.65□□□□□ -2.31
TNFRSF4P43489 MIR4771-2-201ENST00000577758 74 ntBASIC0.65□□□□□ -2.31
TNFRSF4P43489 MIR4771-1-201ENST00000582617 74 ntBASIC0.65□□□□□ -2.31
TNFRSF4P43489 MIR6740-201ENST00000618268 113 ntBASIC0.65□□□□□ -2.31
TNFRSF4P43489 AC010332.2-201ENST00000613083 1904 ntBASIC0.65□□□□□ -2.31
TNFRSF4P43489 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
TNFRSF4P43489 MTND5P32-201ENST00000560711 1802 ntBASIC0.64□□□□□ -2.31
TNFRSF4P43489 HSBP1P2-201ENST00000299671 229 ntBASIC0.64□□□□□ -2.31
TNFRSF4P43489 SNORD114-23-201ENST00000363536 72 ntBASIC0.64□□□□□ -2.31
TNFRSF4P43489 RNU4-16P-201ENST00000364737 141 ntBASIC0.64□□□□□ -2.31
TNFRSF4P43489 Y_RNA.337-201ENST00000365312 102 ntBASIC0.64□□□□□ -2.31
TNFRSF4P43489 MIR588-201ENST00000384900 83 ntBASIC0.64□□□□□ -2.31
TNFRSF4P43489 MIR1827-201ENST00000408549 66 ntBASIC0.64□□□□□ -2.31
TNFRSF4P43489 MTND5P15-201ENST00000434246 349 ntBASIC0.64□□□□□ -2.31
TNFRSF4P43489 MIR3152-201ENST00000579801 74 ntBASIC0.64□□□□□ -2.31
TNFRSF4P43489 MIR6717-201ENST00000622747 73 ntBASIC0.64□□□□□ -2.31
TNFRSF4P43489 RNA5SP325-201ENST00000363756 130 ntBASIC0.63□□□□□ -2.31
TNFRSF4P43489 Y_RNA.257-201ENST00000364596 102 ntBASIC0.63□□□□□ -2.31
TNFRSF4P43489 RNU6-580P-201ENST00000365159 107 ntBASIC0.63□□□□□ -2.31
TNFRSF4P43489 RNU6-597P-201ENST00000365620 102 ntBASIC0.63□□□□□ -2.31
TNFRSF4P43489 MIR193B-201ENST00000384907 83 ntBASIC0.63□□□□□ -2.31
TNFRSF4P43489 MIR146A-201ENST00000385201 99 ntBASIC0.63□□□□□ -2.31
TNFRSF4P43489 SNORD12C-201ENST00000386307 89 ntBASIC0.63□□□□□ -2.31
TNFRSF4P43489 SNORA26.6-201ENST00000391256 115 ntBASIC0.63□□□□□ -2.31
TNFRSF4P43489 COX6CP6-201ENST00000490840 228 ntBASIC0.63□□□□□ -2.31
TNFRSF4P43489 RNU6-977P-201ENST00000516411 103 ntBASIC0.63□□□□□ -2.31
TNFRSF4P43489 uc_338.6-201ENST00000613544 171 ntBASIC0.63□□□□□ -2.31
TNFRSF4P43489 AC010487.4-201ENST00000637027 61 ntBASIC0.63□□□□□ -2.31
TNFRSF4P43489 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
TNFRSF4P43489 RNU6-1237P-201ENST00000384777 107 ntBASIC0.62□□□□□ -2.31
TNFRSF4P43489 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.62□□□□□ -2.31
TNFRSF4P43489 RNU6-1165P-201ENST00000410119 107 ntBASIC0.62□□□□□ -2.31
TNFRSF4P43489 AC092628.1-201ENST00000436250 252 ntBASIC0.62□□□□□ -2.31
TNFRSF4P43489 RNU6-861P-201ENST00000516745 106 ntBASIC0.62□□□□□ -2.31
TNFRSF4P43489 SCARNA15-202ENST00000516881 127 ntBASIC0.62□□□□□ -2.31
TNFRSF4P43489 MIR6844-201ENST00000637122 62 ntBASIC0.62□□□□□ -2.31
TNFRSF4P43489 Y_RNA.29-201ENST00000362570 113 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 Y_RNA.52-201ENST00000362760 96 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 RNU6-1082P-201ENST00000364574 107 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 RNU6-818P-201ENST00000364837 108 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 MIR520F-201ENST00000384824 87 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 SNORD105-201ENST00000386910 85 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 RNU6-1319P-201ENST00000390855 104 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 RNU6-747P-201ENST00000390928 104 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 SNORD37.2-201ENST00000391075 66 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 RNU6-241P-201ENST00000391148 104 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 RNA5SP237-201ENST00000410414 113 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 RNU6-177P-201ENST00000411257 104 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 RPL39P25-201ENST00000449384 154 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 snoU13.2-201ENST00000459201 104 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 Y_RNA.662-201ENST00000516028 97 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 SNORA81.3-201ENST00000517283 198 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 MIR1273G-201ENST00000577677 100 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 MIR4711-201ENST00000578274 70 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.61□□□□□ -2.31
TNFRSF4P43489 AC021613.1-201ENST00000623880 111 ntBASIC0.61□□□□□ -2.31
TNFRSF4P43489 SNORA22.1-201ENST00000362701 134 ntBASIC0.6□□□□□ -2.31
TNFRSF4P43489 RNU6-239P-201ENST00000390990 99 ntBASIC0.6□□□□□ -2.31
TNFRSF4P43489 RNU1-119P-201ENST00000391122 165 ntBASIC0.6□□□□□ -2.31
TNFRSF4P43489 SNORA75.5-201ENST00000391291 81 ntBASIC0.6□□□□□ -2.31
TNFRSF4P43489 RNA5SP193-201ENST00000410353 107 ntBASIC0.6□□□□□ -2.31
TNFRSF4P43489 RNU5E-9P-201ENST00000411164 104 ntBASIC0.6□□□□□ -2.31
TNFRSF4P43489 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.6□□□□□ -2.31
TNFRSF4P43489 AC011195.1-201ENST00000578177 177 ntBASIC0.6□□□□□ -2.31
TNFRSF4P43489 AL589743.1-201ENST00000551932 2712 ntBASIC0.6□□□□□ -2.31
TNFRSF4P43489 RNU4-84P-201ENST00000364200 139 ntBASIC0.59□□□□□ -2.31
TNFRSF4P43489 RNY1P6-201ENST00000384193 109 ntBASIC0.59□□□□□ -2.31
TNFRSF4P43489 MIR520H-201ENST00000385126 88 ntBASIC0.59□□□□□ -2.31
TNFRSF4P43489 MIR1257-201ENST00000408490 117 ntBASIC0.59□□□□□ -2.31
TNFRSF4P43489 RNU7-120P-201ENST00000459334 63 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 169.9 ms