Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SNORD38B-201ENST00000384690 67 ntBASIC0.82□□□□□ -2.28
CCDC3Q9BQI4 MIR624-201ENST00000385217 97 ntBASIC0.82□□□□□ -2.28
CCDC3Q9BQI4 MIR942-201ENST00000401111 86 ntBASIC0.82□□□□□ -2.28
CCDC3Q9BQI4 RNA5SP261-201ENST00000410536 106 ntBASIC0.82□□□□□ -2.28
CCDC3Q9BQI4 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.82□□□□□ -2.28
CCDC3Q9BQI4 FAM71BP1-201ENST00000604431 523 ntBASIC0.82□□□□□ -2.28
CCDC3Q9BQI4 AL136317.1-201ENST00000612653 226 ntBASIC0.82□□□□□ -2.28
CCDC3Q9BQI4 SNORD38B-202ENST00000625943 69 ntBASIC0.82□□□□□ -2.28
CCDC3Q9BQI4 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
CCDC3Q9BQI4 Y_RNA.182-201ENST00000363880 111 ntBASIC0.81□□□□□ -2.28
CCDC3Q9BQI4 Y_RNA.188-201ENST00000363952 111 ntBASIC0.81□□□□□ -2.28
CCDC3Q9BQI4 SNORD114-2-201ENST00000363953 78 ntBASIC0.81□□□□□ -2.28
CCDC3Q9BQI4 RNU6-923P-201ENST00000364753 107 ntBASIC0.81□□□□□ -2.28
CCDC3Q9BQI4 RNU1-133P-201ENST00000364867 167 ntBASIC0.81□□□□□ -2.28
CCDC3Q9BQI4 AC244023.1-201ENST00000426884 112 ntBASIC0.81□□□□□ -2.28
CCDC3Q9BQI4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.81□□□□□ -2.28
CCDC3Q9BQI4 AC023827.1-201ENST00000569247 97 ntBASIC0.81□□□□□ -2.28
CCDC3Q9BQI4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.81□□□□□ -2.28
CCDC3Q9BQI4 AC242498.1-201ENST00000604134 111 ntBASIC0.81□□□□□ -2.28
CCDC3Q9BQI4 Y_RNA.36-201ENST00000362602 112 ntBASIC0.8□□□□□ -2.28
CCDC3Q9BQI4 Y_RNA.430-201ENST00000384081 110 ntBASIC0.8□□□□□ -2.28
CCDC3Q9BQI4 MIR548I3-201ENST00000408378 149 ntBASIC0.8□□□□□ -2.28
CCDC3Q9BQI4 AC004941.2-201ENST00000427009 228 ntBASIC0.8□□□□□ -2.28
CCDC3Q9BQI4 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.8□□□□□ -2.28
CCDC3Q9BQI4 AC067940.1-201ENST00000458411 300 ntBASIC0.8□□□□□ -2.28
CCDC3Q9BQI4 RNU2-11P-201ENST00000459191 187 ntBASIC0.8□□□□□ -2.28
CCDC3Q9BQI4 MIR4431-201ENST00000579990 94 ntBASIC0.8□□□□□ -2.28
CCDC3Q9BQI4 MIR3129-201ENST00000581095 76 ntBASIC0.8□□□□□ -2.28
CCDC3Q9BQI4 AC013244.2-201ENST00000603396 103 ntBASIC0.8□□□□□ -2.28
CCDC3Q9BQI4 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.8□□□□□ -2.28
CCDC3Q9BQI4 MIR376A2-201ENST00000636782 80 ntBASIC0.8□□□□□ -2.28
CCDC3Q9BQI4 RNU6-1020P-201ENST00000363684 107 ntBASIC0.79□□□□□ -2.28
CCDC3Q9BQI4 Y_RNA.351-201ENST00000365436 96 ntBASIC0.79□□□□□ -2.28
CCDC3Q9BQI4 MIR1827-201ENST00000408549 66 ntBASIC0.79□□□□□ -2.28
CCDC3Q9BQI4 RNA5SP127-201ENST00000411051 133 ntBASIC0.79□□□□□ -2.28
CCDC3Q9BQI4 AC090844.1-201ENST00000422019 156 ntBASIC0.79□□□□□ -2.28
CCDC3Q9BQI4 AC113410.1-201ENST00000505029 247 ntBASIC0.79□□□□□ -2.28
CCDC3Q9BQI4 Y_RNA.700-201ENST00000516806 100 ntBASIC0.79□□□□□ -2.28
CCDC3Q9BQI4 MIR4714-201ENST00000580728 77 ntBASIC0.79□□□□□ -2.28
CCDC3Q9BQI4 SNORA25.7-201ENST00000364375 127 ntBASIC0.78□□□□□ -2.28
CCDC3Q9BQI4 SNORA1.1-201ENST00000364671 133 ntBASIC0.78□□□□□ -2.28
CCDC3Q9BQI4 Y_RNA.412-201ENST00000384001 104 ntBASIC0.78□□□□□ -2.28
CCDC3Q9BQI4 SNORA2B-201ENST00000384583 137 ntBASIC0.78□□□□□ -2.28
CCDC3Q9BQI4 SNORD89-201ENST00000390981 114 ntBASIC0.78□□□□□ -2.28
CCDC3Q9BQI4 SNORA26.6-201ENST00000391256 115 ntBASIC0.78□□□□□ -2.28
CCDC3Q9BQI4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.78□□□□□ -2.28
CCDC3Q9BQI4 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.78□□□□□ -2.28
CCDC3Q9BQI4 MIR6779-201ENST00000617283 64 ntBASIC0.78□□□□□ -2.28
CCDC3Q9BQI4 U6.106-201ENST00000636360 105 ntBASIC0.78□□□□□ -2.28
CCDC3Q9BQI4 MIR6866-201ENST00000638146 69 ntBASIC0.78□□□□□ -2.28
CCDC3Q9BQI4 RNU6-379P-201ENST00000363813 104 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 Y_RNA.515-201ENST00000384535 112 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 Y_RNA.552-201ENST00000384665 112 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 MIR608-201ENST00000384820 100 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 RNU6-1319P-201ENST00000390855 104 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 RNU6-747P-201ENST00000390928 104 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 RNU6-241P-201ENST00000391148 104 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 RNU6-602P-201ENST00000411155 105 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 RNU6-177P-201ENST00000411257 104 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 AC006461.1-201ENST00000412637 326 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 RPS3AP1-201ENST00000413190 320 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 MIR18B-201ENST00000454574 71 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 SCARNA15-202ENST00000516881 127 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 RNU6-1271P-201ENST00000517049 105 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 AC130289.1-201ENST00000577321 73 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 AC072026.1-201ENST00000605023 201 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 RNU6-94P-201ENST00000607728 107 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 MIR6717-201ENST00000622747 73 ntBASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
CCDC3Q9BQI4 MIR302B-201ENST00000362188 73 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 Y_RNA.233-201ENST00000364407 101 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 Y_RNA.393-201ENST00000383936 102 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 MIR563-201ENST00000385080 79 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 RNA5SP95-201ENST00000410319 137 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 RNU6-994P-201ENST00000410507 111 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 RNU2-64P-201ENST00000411315 191 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 snoU13.2-201ENST00000459201 104 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 AC133485.1-201ENST00000567176 124 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 AC138907.6-201ENST00000568401 126 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 MIR3152-201ENST00000579801 74 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 MIR4653-201ENST00000585107 83 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 AL353765.1-201ENST00000605514 183 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 MIR6835-201ENST00000621552 64 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 AC091932.4-201ENST00000623386 200 ntBASIC0.76□□□□□ -2.29
CCDC3Q9BQI4 MIR1-1-201ENST00000362147 71 ntBASIC0.75□□□□□ -2.29
CCDC3Q9BQI4 Y_RNA.476-201ENST00000384347 108 ntBASIC0.75□□□□□ -2.29
CCDC3Q9BQI4 MIR100-201ENST00000385259 80 ntBASIC0.75□□□□□ -2.29
CCDC3Q9BQI4 RPS26P5-201ENST00000418544 335 ntBASIC0.75□□□□□ -2.29
CCDC3Q9BQI4 AL138752.1-201ENST00000452964 351 ntBASIC0.75□□□□□ -2.29
CCDC3Q9BQI4 Y_RNA.644-201ENST00000459006 113 ntBASIC0.75□□□□□ -2.29
CCDC3Q9BQI4 RNU6-351P-201ENST00000516097 100 ntBASIC0.75□□□□□ -2.29
CCDC3Q9BQI4 Y_RNA.674-201ENST00000516362 113 ntBASIC0.75□□□□□ -2.29
CCDC3Q9BQI4 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.75□□□□□ -2.29
CCDC3Q9BQI4 RNU6-369P-201ENST00000362515 102 ntBASIC0.74□□□□□ -2.29
CCDC3Q9BQI4 RNU6-200P-201ENST00000364743 107 ntBASIC0.74□□□□□ -2.29
CCDC3Q9BQI4 RNU6-47P-201ENST00000383866 107 ntBASIC0.74□□□□□ -2.29
CCDC3Q9BQI4 MIR146A-201ENST00000385201 99 ntBASIC0.74□□□□□ -2.29
CCDC3Q9BQI4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.74□□□□□ -2.29
CCDC3Q9BQI4 RNU7-62P-201ENST00000458856 62 ntBASIC0.74□□□□□ -2.29
CCDC3Q9BQI4 PSMC1P5-201ENST00000512850 177 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 234.5 ms