Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 MIR1257-201ENST00000408490 117 ntBASIC0.35□□□□□ -2.35
RPUSD4Q96CM3 AC008737.2-201ENST00000599446 118 ntBASIC0.35□□□□□ -2.35
RPUSD4Q96CM3 Z83818.1-201ENST00000603584 150 ntBASIC0.35□□□□□ -2.35
RPUSD4Q96CM3 MIR302B-201ENST00000362188 73 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.7-201ENST00000362352 102 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 RNA5SP347-201ENST00000362445 119 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.47-201ENST00000362697 108 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 RNU6-1309P-201ENST00000363305 108 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.288-201ENST00000364854 92 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 SNORA25.9-201ENST00000365087 128 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 SNORA36.2-201ENST00000384004 127 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 MIR624-201ENST00000385217 97 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 RNU6-578P-201ENST00000390980 103 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 RNU6-447P-201ENST00000410293 104 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 RNU6-1118P-201ENST00000410382 104 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 RNU6-1076P-201ENST00000410397 104 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 RNU6-355P-201ENST00000410427 104 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 RNU6-791P-201ENST00000410467 104 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 RNU6-705P-201ENST00000410601 104 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 RNU6-1100P-201ENST00000410691 104 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 RNU6-860P-201ENST00000410860 104 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 RNU6-1217P-201ENST00000411276 104 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 RNU6-785P-201ENST00000411324 104 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 AC114737.2-201ENST00000421583 173 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 AC015818.7-201ENST00000428754 109 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 AC087499.7-201ENST00000441958 109 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 AC002350.1-201ENST00000490759 375 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 SNORD116-25-201ENST00000516517 92 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 AP003327.1-201ENST00000529684 127 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 MIR3152-201ENST00000579801 74 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 MIR3129-201ENST00000581095 76 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 U6.90-201ENST00000614007 104 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 U6.70-201ENST00000620287 104 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 MIR5087-201ENST00000635826 76 ntBASIC0.34□□□□□ -2.36
RPUSD4Q96CM3 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.20-201ENST00000362479 113 ntBASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.277-201ENST00000364754 102 ntBASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 RNU6-1011P-201ENST00000384668 107 ntBASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 RNU2-38P-201ENST00000410856 79 ntBASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 RNU7-102P-201ENST00000458948 62 ntBASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 MTND1P19-201ENST00000511780 315 ntBASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.668-201ENST00000516233 93 ntBASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 RNU6-229P-201ENST00000516614 102 ntBASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 SCARNA15-202ENST00000516881 127 ntBASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 MIR378D2-201ENST00000580636 98 ntBASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 AC008608.1-201ENST00000603910 127 ntBASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 MIR6504-201ENST00000613520 61 ntBASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 AL662814.1-201ENST00000617364 121 ntBASIC0.33□□□□□ -2.36
RPUSD4Q96CM3 AC090625.1-201ENST00000357130 210 ntBASIC0.32□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.133-201ENST00000363428 110 ntBASIC0.32□□□□□ -2.36
RPUSD4Q96CM3 RNA5SP499-201ENST00000363982 119 ntBASIC0.32□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.478-201ENST00000384358 107 ntBASIC0.32□□□□□ -2.36
RPUSD4Q96CM3 RNU6-364P-201ENST00000384387 107 ntBASIC0.32□□□□□ -2.36
RPUSD4Q96CM3 RNA5SP127-201ENST00000411051 133 ntBASIC0.32□□□□□ -2.36
RPUSD4Q96CM3 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.32□□□□□ -2.36
RPUSD4Q96CM3 MTCYBP9-201ENST00000431021 303 ntBASIC0.32□□□□□ -2.36
RPUSD4Q96CM3 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.32□□□□□ -2.36
RPUSD4Q96CM3 RNU7-156P-201ENST00000517214 74 ntBASIC0.32□□□□□ -2.36
RPUSD4Q96CM3 MIR4452-201ENST00000583004 71 ntBASIC0.32□□□□□ -2.36
RPUSD4Q96CM3 SNORA4-201ENST00000584302 138 ntBASIC0.32□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.42-201ENST00000362660 108 ntBASIC0.31□□□□□ -2.36
RPUSD4Q96CM3 SNORA50A-201ENST00000384225 134 ntBASIC0.31□□□□□ -2.36
RPUSD4Q96CM3 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.31□□□□□ -2.36
RPUSD4Q96CM3 AC092628.1-201ENST00000436250 252 ntBASIC0.31□□□□□ -2.36
RPUSD4Q96CM3 RNU6-1132P-201ENST00000459214 107 ntBASIC0.31□□□□□ -2.36
RPUSD4Q96CM3 RNU6-448P-201ENST00000517052 107 ntBASIC0.31□□□□□ -2.36
RPUSD4Q96CM3 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.31□□□□□ -2.36
RPUSD4Q96CM3 MIR3124-201ENST00000582636 67 ntBASIC0.31□□□□□ -2.36
RPUSD4Q96CM3 MIR8066-201ENST00000617280 78 ntBASIC0.31□□□□□ -2.36
RPUSD4Q96CM3 MIRLET7D-201ENST00000362263 87 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 RNA5SP432-201ENST00000362480 116 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.435-201ENST00000384095 112 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 MIR216A-201ENST00000385063 110 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 MIR548J-201ENST00000408833 112 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 AC098934.3-201ENST00000430450 190 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 AL121914.1-201ENST00000450188 156 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 RNU6-893P-201ENST00000458841 100 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 RNU7-45P-201ENST00000459460 63 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 SNORA68.3-201ENST00000515906 83 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 RNU6-765P-201ENST00000516916 99 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 MIR151B-201ENST00000584249 96 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 MIR6788-201ENST00000618842 66 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 AC021613.1-201ENST00000623880 111 ntBASIC0.3□□□□□ -2.36
RPUSD4Q96CM3 MIR342-201ENST00000362212 99 ntBASIC0.29□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.164-201ENST00000363709 102 ntBASIC0.29□□□□□ -2.36
RPUSD4Q96CM3 RNU6-694P-201ENST00000364071 147 ntBASIC0.29□□□□□ -2.36
RPUSD4Q96CM3 RNY1-201ENST00000364228 113 ntBASIC0.29□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.238-201ENST00000364441 102 ntBASIC0.29□□□□□ -2.36
RPUSD4Q96CM3 RNU6-597P-201ENST00000365620 102 ntBASIC0.29□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.459-201ENST00000384251 102 ntBASIC0.29□□□□□ -2.36
RPUSD4Q96CM3 Y_RNA.539-201ENST00000384635 107 ntBASIC0.29□□□□□ -2.36
RPUSD4Q96CM3 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.29□□□□□ -2.36
RPUSD4Q96CM3 MIR5000-201ENST00000577717 103 ntBASIC0.29□□□□□ -2.36
RPUSD4Q96CM3 AL078603.1-201ENST00000603824 313 ntBASIC0.29□□□□□ -2.36
RPUSD4Q96CM3 MIR8070-201ENST00000616510 88 ntBASIC0.29□□□□□ -2.36
RPUSD4Q96CM3 AC092634.7-201ENST00000621022 103 ntBASIC0.29□□□□□ -2.36
RPUSD4Q96CM3 SNORA22.1-201ENST00000362701 134 ntBASIC0.28□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 177.5 ms