Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 Y_RNA.82-201ENST00000363000 102 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.92-201ENST00000363043 102 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.199-201ENST00000364014 102 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.235-201ENST00000364412 102 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.277-201ENST00000364754 102 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.306-201ENST00000365015 102 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.312-201ENST00000365089 102 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.322-201ENST00000365151 102 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.440-201ENST00000384120 114 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.508-201ENST00000384502 114 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 RNU6-1160P-201ENST00000384546 104 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.574-201ENST00000384766 95 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 MIR606-201ENST00000384851 96 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 MIR520H-201ENST00000385126 88 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 SNORD12C-201ENST00000386307 89 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 SNORD77.3-201ENST00000391113 65 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 MIR1302-6-201ENST00000408466 90 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 MIR548F4-201ENST00000408515 105 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 RNU6-602P-201ENST00000411155 105 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 RNU7-73P-201ENST00000458743 63 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.650-201ENST00000459002 102 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 RNU2-11P-201ENST00000459191 187 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.52□□□□□ -2.33
VPS39Q96JC1 RNU6-977P-201ENST00000516411 103 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.777-201ENST00000516982 102 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 MIR5688-201ENST00000580619 83 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 MIR4264-201ENST00000583520 66 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.771-201ENST00000598668 102 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 AC008737.2-201ENST00000599446 118 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Y_RNA.789-201ENST00000622480 102 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 Z97988.1-201ENST00000637697 135 ntBASIC0.52□□□□□ -2.33
VPS39Q96JC1 RNU6-653P-201ENST00000363074 106 ntBASIC0.51□□□□□ -2.33
VPS39Q96JC1 RNU6-597P-201ENST00000365620 102 ntBASIC0.51□□□□□ -2.33
VPS39Q96JC1 SNORA36.2-201ENST00000384004 127 ntBASIC0.51□□□□□ -2.33
VPS39Q96JC1 Y_RNA.432-201ENST00000384087 111 ntBASIC0.51□□□□□ -2.33
VPS39Q96JC1 SNORD38B-201ENST00000384690 67 ntBASIC0.51□□□□□ -2.33
VPS39Q96JC1 AL157398.1-201ENST00000452981 186 ntBASIC0.51□□□□□ -2.33
VPS39Q96JC1 Y_RNA.679-201ENST00000516416 91 ntBASIC0.51□□□□□ -2.33
VPS39Q96JC1 MIR4676-201ENST00000583078 72 ntBASIC0.51□□□□□ -2.33
VPS39Q96JC1 MIR4282-201ENST00000583613 67 ntBASIC0.51□□□□□ -2.33
VPS39Q96JC1 AC011921.3-201ENST00000605540 361 ntBASIC0.51□□□□□ -2.33
VPS39Q96JC1 AC022709.1-201ENST00000615967 87 ntBASIC0.51□□□□□ -2.33
VPS39Q96JC1 SNORD38B-202ENST00000625943 69 ntBASIC0.51□□□□□ -2.33
VPS39Q96JC1 MIR335-201ENST00000362173 94 ntBASIC0.5□□□□□ -2.33
VPS39Q96JC1 Y_RNA.54-201ENST00000362766 105 ntBASIC0.5□□□□□ -2.33
VPS39Q96JC1 RNU1-133P-201ENST00000364867 167 ntBASIC0.5□□□□□ -2.33
VPS39Q96JC1 MIR588-201ENST00000384900 83 ntBASIC0.5□□□□□ -2.33
VPS39Q96JC1 MIR616-201ENST00000385293 97 ntBASIC0.5□□□□□ -2.33
VPS39Q96JC1 RNU6-381P-201ENST00000391259 108 ntBASIC0.5□□□□□ -2.33
VPS39Q96JC1 RNU7-56P-201ENST00000458744 62 ntBASIC0.5□□□□□ -2.33
VPS39Q96JC1 RNU6-998P-201ENST00000515894 101 ntBASIC0.5□□□□□ -2.33
VPS39Q96JC1 MIR3129-201ENST00000581095 76 ntBASIC0.5□□□□□ -2.33
VPS39Q96JC1 MIR4804-201ENST00000581683 73 ntBASIC0.5□□□□□ -2.33
VPS39Q96JC1 RNA5SP347-201ENST00000362445 119 ntBASIC0.49□□□□□ -2.33
VPS39Q96JC1 RNA5SP499-201ENST00000363982 119 ntBASIC0.49□□□□□ -2.33
VPS39Q96JC1 Y_RNA.354-201ENST00000365448 111 ntBASIC0.49□□□□□ -2.33
VPS39Q96JC1 Y_RNA.355-201ENST00000365462 98 ntBASIC0.49□□□□□ -2.33
VPS39Q96JC1 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
VPS39Q96JC1 RNU6-1189P-201ENST00000383958 107 ntBASIC0.49□□□□□ -2.33
VPS39Q96JC1 RNU6-1237P-201ENST00000384777 107 ntBASIC0.49□□□□□ -2.33
VPS39Q96JC1 RNU2-38P-201ENST00000410856 79 ntBASIC0.49□□□□□ -2.33
VPS39Q96JC1 AC006504.6-201ENST00000590142 199 ntBASIC0.49□□□□□ -2.33
VPS39Q96JC1 AC008608.1-201ENST00000603910 127 ntBASIC0.49□□□□□ -2.33
VPS39Q96JC1 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.48□□□□□ -2.33
VPS39Q96JC1 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.48□□□□□ -2.33
VPS39Q96JC1 Y_RNA.47-201ENST00000362697 108 ntBASIC0.48□□□□□ -2.33
VPS39Q96JC1 SNORA1.1-201ENST00000364671 133 ntBASIC0.48□□□□□ -2.33
VPS39Q96JC1 Y_RNA.422-201ENST00000384054 114 ntBASIC0.48□□□□□ -2.33
VPS39Q96JC1 MIR573-201ENST00000384964 99 ntBASIC0.48□□□□□ -2.33
VPS39Q96JC1 MIR548I3-201ENST00000408378 149 ntBASIC0.48□□□□□ -2.33
VPS39Q96JC1 RNU2-55P-201ENST00000411146 174 ntBASIC0.48□□□□□ -2.33
VPS39Q96JC1 RNU7-53P-201ENST00000516705 60 ntBASIC0.48□□□□□ -2.33
VPS39Q96JC1 AC097639.2-201ENST00000603159 172 ntBASIC0.48□□□□□ -2.33
VPS39Q96JC1 SNORD18A-201ENST00000363753 72 ntBASIC0.47□□□□□ -2.33
VPS39Q96JC1 SNORA26.6-201ENST00000391256 115 ntBASIC0.47□□□□□ -2.33
VPS39Q96JC1 AC092628.1-201ENST00000436250 252 ntBASIC0.47□□□□□ -2.33
VPS39Q96JC1 snoU13.2-201ENST00000459201 104 ntBASIC0.47□□□□□ -2.33
VPS39Q96JC1 RNA5SP153-201ENST00000516498 76 ntBASIC0.47□□□□□ -2.33
VPS39Q96JC1 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.47□□□□□ -2.33
VPS39Q96JC1 MIR6515-201ENST00000619843 57 ntBASIC0.47□□□□□ -2.33
VPS39Q96JC1 RNU6-694P-201ENST00000364071 147 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 Y_RNA.351-201ENST00000365436 96 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 RNU6-1165P-201ENST00000410119 107 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.46□□□□□ -2.34
VPS39Q96JC1 RNU7-96P-201ENST00000459535 64 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 AL117187.1-201ENST00000555482 181 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 MIR3612-201ENST00000579753 87 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 Y_RNA.812-201ENST00000610788 101 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 AL442067.1-201ENST00000613261 223 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 Y_RNA.784-201ENST00000613803 101 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 Y_RNA.787-201ENST00000616522 101 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 Y_RNA.780-201ENST00000617336 101 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 Y_RNA.801-201ENST00000619005 101 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 MIR6513-201ENST00000621188 64 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 MIR6717-201ENST00000622747 73 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 MIR5087-201ENST00000635826 76 ntBASIC0.46□□□□□ -2.34
VPS39Q96JC1 MIR30D-201ENST00000362283 70 ntBASIC0.45□□□□□ -2.34
VPS39Q96JC1 MIR18A-201ENST00000362310 71 ntBASIC0.45□□□□□ -2.34
VPS39Q96JC1 Y_RNA.118-201ENST00000363300 101 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 220.3 ms