Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RNU6-906P-201ENST00000384700 70 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 PCMTD1P1-201ENST00000455560 355 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 SNORA18.6-201ENST00000516792 115 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 MIR3920-201ENST00000581751 86 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 MIR548AE1-201ENST00000583292 70 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 SNORD74.6-201ENST00000364796 70 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 RNY1P2-201ENST00000364820 117 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 Y_RNA.407-201ENST00000383986 113 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 Y_RNA.430-201ENST00000384081 110 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 MIR29B1-201ENST00000385015 81 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 CEP57L1P1-201ENST00000430943 1201 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC-1.21□□□□□ -2.6
USF3Q68DE3 AC093423.1-201ENST00000440817 142 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 SERF1AP1-201ENST00000514575 187 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 AL445584.3-201ENST00000617173 78 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 Y_RNA.128-201ENST00000363391 112 ntBASIC-1.22□□□□□ -2.6
USF3Q68DE3 SNORD113-7-201ENST00000363762 77 ntBASIC-1.22□□□□□ -2.6
USF3Q68DE3 RNU6-1323P-201ENST00000384025 107 ntBASIC-1.22□□□□□ -2.6
USF3Q68DE3 AC245505.1-201ENST00000556398 224 ntBASIC-1.22□□□□□ -2.6
USF3Q68DE3 AC092747.3-201ENST00000603769 301 ntBASIC-1.22□□□□□ -2.6
USF3Q68DE3 AC004467.1-201ENST00000615678 330 ntBASIC-1.22□□□□□ -2.6
USF3Q68DE3 RNU6-128P-201ENST00000383976 107 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 AL603914.1-201ENST00000401964 204 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 SNORA36B-201ENST00000410438 131 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 CHEK2P4-201ENST00000450340 246 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 RNU7-115P-201ENST00000516433 55 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC-1.23□□□□□ -2.61
USF3Q68DE3 AL121655.1-201ENST00000605811 308 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-1.23□□□□□ -2.61
USF3Q68DE3 RNU6-318P-201ENST00000384283 103 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 SNORA20-201ENST00000384662 132 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 MIR496-201ENST00000385226 102 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 RNU6-710P-201ENST00000410424 105 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 AC084290.1-201ENST00000434995 374 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC-1.23□□□□□ -2.61
USF3Q68DE3 AC244090.1-201ENST00000441884 93 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 SCARNA17.3-201ENST00000516381 125 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 RNU6-412P-201ENST00000516434 106 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 MIR4999-201ENST00000585029 91 ntBASIC-1.23□□□□□ -2.61
USF3Q68DE3 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC-1.23□□□□□ -2.61
USF3Q68DE3 Y_RNA.221-201ENST00000364248 96 ntBASIC-1.24□□□□□ -2.61
USF3Q68DE3 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.24□□□□□ -2.61
USF3Q68DE3 RNU6-159P-201ENST00000391080 106 ntBASIC-1.24□□□□□ -2.61
USF3Q68DE3 RNU2-51P-201ENST00000410708 197 ntBASIC-1.24□□□□□ -2.61
USF3Q68DE3 RNU7-141P-201ENST00000459304 62 ntBASIC-1.24□□□□□ -2.61
USF3Q68DE3 AC005357.1-201ENST00000588399 301 ntBASIC-1.24□□□□□ -2.61
USF3Q68DE3 MIR519E-201ENST00000385075 84 ntBASIC-1.24□□□□□ -2.61
USF3Q68DE3 AL606845.1-201ENST00000404881 255 ntBASIC-1.24□□□□□ -2.61
USF3Q68DE3 AC018638.8-201ENST00000588755 281 ntBASIC-1.24□□□□□ -2.61
USF3Q68DE3 RNU5F-7P-201ENST00000363696 115 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 RNU6-595P-201ENST00000363944 107 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 Y_RNA.366-201ENST00000365540 102 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 RNU6-831P-201ENST00000384548 107 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 RNU6-540P-201ENST00000384622 101 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 SNORD12B-201ENST00000410433 91 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC-1.25□□□□□ -2.61
USF3Q68DE3 Y_RNA.679-201ENST00000516416 91 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC-1.25□□□□□ -2.61
USF3Q68DE3 DLEU2_5.2-201ENST00000610606 84 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 RNY4P28-201ENST00000365281 93 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 RNU6-1189P-201ENST00000383958 107 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 Y_RNA.405-201ENST00000383979 100 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 Y_RNA.451-201ENST00000384200 100 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 Y_RNA.524-201ENST00000384564 100 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 Y_RNA.561-201ENST00000384694 100 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 DLGAP5P1-201ENST00000430307 464 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 AC023449.1-201ENST00000454464 154 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 snoU13.13-201ENST00000458842 104 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 Y_RNA.653-201ENST00000459091 95 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 RNU6-1208P-201ENST00000459588 107 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 RNU7-79P-201ENST00000516082 62 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 RNU1-54P-201ENST00000517181 120 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 AP001506.1-201ENST00000615444 211 ntBASIC-1.25□□□□□ -2.61
USF3Q68DE3 Y_RNA.351-201ENST00000365436 96 ntBASIC-1.26□□□□□ -2.61
USF3Q68DE3 RNU4-20P-201ENST00000365601 151 ntBASIC-1.26□□□□□ -2.61
USF3Q68DE3 AC098826.2-201ENST00000452011 651 ntBASIC-1.26□□□□□ -2.61
USF3Q68DE3 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC-1.26□□□□□ -2.61
USF3Q68DE3 RNU5B-6P-201ENST00000516765 68 ntBASIC-1.26□□□□□ -2.61
USF3Q68DE3 RNU7-35P-201ENST00000517174 62 ntBASIC-1.26□□□□□ -2.61
USF3Q68DE3 MIR4308-201ENST00000580634 81 ntBASIC-1.26□□□□□ -2.61
USF3Q68DE3 AC027449.1-201ENST00000608890 407 ntBASIC-1.26□□□□□ -2.61
USF3Q68DE3 RNU6-1260P-201ENST00000362944 107 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 Y_RNA.352-201ENST00000365439 102 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 Y_RNA.436-201ENST00000384097 102 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 MIRLET7B-201ENST00000385140 83 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 AC098479.1-201ENST00000609225 154 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 RNA5SP93-201ENST00000362525 114 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 SNORD115-25-201ENST00000362619 82 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 Y_RNA.229-201ENST00000364347 113 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 RNU6-973P-201ENST00000364690 107 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 RNU6-571P-201ENST00000384128 107 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 Y_RNA.557-201ENST00000384680 107 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 RNU6-1242P-201ENST00000391052 103 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 SNORD75.2-201ENST00000408784 58 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 RNU6-1086P-201ENST00000410930 100 ntBASIC-1.27□□□□□ -2.61
USF3Q68DE3 MTND3P7-201ENST00000474435 343 ntBASIC-1.27□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms