Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 MIR342-201ENST00000362212 99 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-34-201ENST00000362441 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-12-201ENST00000362583 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-29-201ENST00000362834 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-9-201ENST00000362912 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-21-201ENST00000362963 81 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-14-201ENST00000363090 81 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-13-201ENST00000363358 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 Y_RNA.150-201ENST00000363562 102 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-41-201ENST00000363608 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-11-201ENST00000363616 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-5-201ENST00000363633 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-39-201ENST00000363694 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-4-201ENST00000363810 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-16-201ENST00000363887 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-6-201ENST00000363942 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-42-201ENST00000364273 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-15-201ENST00000364809 81 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-1-201ENST00000364961 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-26-201ENST00000365067 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-10-201ENST00000365073 81 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 Y_RNA.355-201ENST00000365462 98 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-43-201ENST00000365503 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-36-201ENST00000365629 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORA31.2-201ENST00000516019 134 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 MIR3192-201ENST00000584920 77 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 SNORD115-40-201ENST00000606510 82 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 MIR4791-201ENST00000607666 84 ntBASIC1.61□□□□□ -2.15
NUP88Q99567 U8.1-201ENST00000362843 134 ntBASIC1.6□□□□□ -2.15
NUP88Q99567 SNORA25.3-201ENST00000363205 127 ntBASIC1.6□□□□□ -2.15
NUP88Q99567 RNU6-978P-201ENST00000364371 103 ntBASIC1.6□□□□□ -2.15
NUP88Q99567 SNORA27-201ENST00000384323 126 ntBASIC1.6□□□□□ -2.15
NUP88Q99567 SNORA40.5-201ENST00000391061 128 ntBASIC1.6□□□□□ -2.15
NUP88Q99567 SNORD37.2-201ENST00000391075 66 ntBASIC1.6□□□□□ -2.15
NUP88Q99567 AC074198.2-201ENST00000508153 258 ntBASIC1.6□□□□□ -2.15
NUP88Q99567 AL353770.2-201ENST00000620024 78 ntBASIC1.6□□□□□ -2.15
NUP88Q99567 RNU6-53P-201ENST00000365367 106 ntBASIC1.59□□□□□ -2.15
NUP88Q99567 Y_RNA.393-201ENST00000383936 102 ntBASIC1.59□□□□□ -2.15
NUP88Q99567 Y_RNA.537-201ENST00000384626 109 ntBASIC1.59□□□□□ -2.15
NUP88Q99567 MIR222-201ENST00000384992 110 ntBASIC1.59□□□□□ -2.15
NUP88Q99567 RNU6-239P-201ENST00000390990 99 ntBASIC1.59□□□□□ -2.15
NUP88Q99567 SNORD77.3-201ENST00000391113 65 ntBASIC1.59□□□□□ -2.15
NUP88Q99567 RNA5SP127-201ENST00000411051 133 ntBASIC1.59□□□□□ -2.15
NUP88Q99567 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.59□□□□□ -2.15
NUP88Q99567 AC048334.1-201ENST00000477975 159 ntBASIC1.59□□□□□ -2.15
NUP88Q99567 AC004223.1-201ENST00000479840 271 ntBASIC1.59□□□□□ -2.15
NUP88Q99567 RPS26P48-201ENST00000491713 339 ntBASIC1.59□□□□□ -2.15
NUP88Q99567 RNU6-958P-201ENST00000516995 106 ntBASIC1.59□□□□□ -2.15
NUP88Q99567 AL365205.2-201ENST00000594586 68 ntBASIC1.59□□□□□ -2.15
NUP88Q99567 AC098479.1-201ENST00000609225 154 ntBASIC1.59□□□□□ -2.15
NUP88Q99567 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
NUP88Q99567 Y_RNA.224-201ENST00000364308 111 ntBASIC1.58□□□□□ -2.16
NUP88Q99567 RNU6-392P-201ENST00000364926 101 ntBASIC1.58□□□□□ -2.16
NUP88Q99567 RNU6-768P-201ENST00000384683 107 ntBASIC1.58□□□□□ -2.16
NUP88Q99567 RNU5E-9P-201ENST00000411164 104 ntBASIC1.58□□□□□ -2.16
NUP88Q99567 RNU6-938P-201ENST00000411285 103 ntBASIC1.58□□□□□ -2.16
NUP88Q99567 RPS29P29-201ENST00000456396 171 ntBASIC1.58□□□□□ -2.16
NUP88Q99567 SNORA31.4-201ENST00000516049 129 ntBASIC1.58□□□□□ -2.16
NUP88Q99567 RNA5SP61-201ENST00000516453 100 ntBASIC1.58□□□□□ -2.16
NUP88Q99567 RNU7-70P-201ENST00000516941 66 ntBASIC1.58□□□□□ -2.16
NUP88Q99567 AC104465.1-201ENST00000611365 139 ntBASIC1.58□□□□□ -2.16
NUP88Q99567 FTX_2.1-201ENST00000618816 94 ntBASIC1.58□□□□□ -2.16
NUP88Q99567 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.57□□□□□ -2.16
NUP88Q99567 RNU4-84P-201ENST00000364200 139 ntBASIC1.57□□□□□ -2.16
NUP88Q99567 Y_RNA.494-201ENST00000384432 111 ntBASIC1.57□□□□□ -2.16
NUP88Q99567 MIR518E-201ENST00000385252 88 ntBASIC1.57□□□□□ -2.16
NUP88Q99567 RNU1-123P-201ENST00000458950 160 ntBASIC1.57□□□□□ -2.16
NUP88Q99567 RPS29P24-201ENST00000486345 171 ntBASIC1.57□□□□□ -2.16
NUP88Q99567 AL133373.1-201ENST00000497098 94 ntBASIC1.57□□□□□ -2.16
NUP88Q99567 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.57□□□□□ -2.16
NUP88Q99567 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.57□□□□□ -2.16
NUP88Q99567 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.57□□□□□ -2.16
NUP88Q99567 MIR6844-201ENST00000637122 62 ntBASIC1.57□□□□□ -2.16
NUP88Q99567 MIR103A2-201ENST00000362154 78 ntBASIC1.56□□□□□ -2.16
NUP88Q99567 MIR302B-201ENST00000362188 73 ntBASIC1.56□□□□□ -2.16
NUP88Q99567 RNU6-1292P-201ENST00000383856 107 ntBASIC1.56□□□□□ -2.16
NUP88Q99567 RNU6-1336P-201ENST00000383886 109 ntBASIC1.56□□□□□ -2.16
NUP88Q99567 RNU2-64P-201ENST00000411315 191 ntBASIC1.56□□□□□ -2.16
NUP88Q99567 AC245047.7-201ENST00000440265 293 ntBASIC1.56□□□□□ -2.16
NUP88Q99567 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
NUP88Q99567 Y_RNA.116-201ENST00000363292 103 ntBASIC1.55□□□□□ -2.16
NUP88Q99567 Y_RNA.272-201ENST00000364696 102 ntBASIC1.55□□□□□ -2.16
NUP88Q99567 Y_RNA.351-201ENST00000365436 96 ntBASIC1.55□□□□□ -2.16
NUP88Q99567 RNU6-597P-201ENST00000365620 102 ntBASIC1.55□□□□□ -2.16
NUP88Q99567 RNU6-955P-201ENST00000410497 104 ntBASIC1.55□□□□□ -2.16
NUP88Q99567 RNU7-53P-201ENST00000516705 60 ntBASIC1.55□□□□□ -2.16
NUP88Q99567 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.55□□□□□ -2.16
NUP88Q99567 MIR5197-201ENST00000583721 112 ntBASIC1.55□□□□□ -2.16
NUP88Q99567 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.55□□□□□ -2.16
NUP88Q99567 MTND1P7-201ENST00000632801 297 ntBASIC1.55□□□□□ -2.16
NUP88Q99567 Y_RNA.8-201ENST00000362353 102 ntBASIC1.54□□□□□ -2.16
NUP88Q99567 Y_RNA.440-201ENST00000384120 114 ntBASIC1.54□□□□□ -2.16
NUP88Q99567 RNU6-910P-201ENST00000390844 107 ntBASIC1.54□□□□□ -2.16
NUP88Q99567 AL035398.1-201ENST00000430869 322 ntBASIC1.54□□□□□ -2.16
NUP88Q99567 RNU7-96P-201ENST00000459535 64 ntBASIC1.54□□□□□ -2.16
NUP88Q99567 MIR7974-201ENST00000615835 79 ntBASIC1.54□□□□□ -2.16
NUP88Q99567 RNU6-818P-201ENST00000364837 108 ntBASIC1.53□□□□□ -2.16
NUP88Q99567 RNU6-886P-201ENST00000384319 105 ntBASIC1.53□□□□□ -2.16
NUP88Q99567 MIR624-201ENST00000385217 97 ntBASIC1.53□□□□□ -2.16
NUP88Q99567 SNORA75.5-201ENST00000391291 81 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 133.5 ms