Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC245047.7-201ENST00000440265 293 ntBASIC1.62□□□□□ -2.15
CHMP4CQ96CF2 AL133373.1-201ENST00000497098 94 ntBASIC1.62□□□□□ -2.15
CHMP4CQ96CF2 Y_RNA.662-201ENST00000516028 97 ntBASIC1.62□□□□□ -2.15
CHMP4CQ96CF2 MIR3129-201ENST00000581095 76 ntBASIC1.62□□□□□ -2.15
CHMP4CQ96CF2 AC004792.1-201ENST00000614523 137 ntBASIC1.62□□□□□ -2.15
CHMP4CQ96CF2 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.62□□□□□ -2.15
CHMP4CQ96CF2 MIR337-201ENST00000362281 93 ntBASIC1.61□□□□□ -2.15
CHMP4CQ96CF2 RNY1P10-201ENST00000363268 113 ntBASIC1.61□□□□□ -2.15
CHMP4CQ96CF2 Y_RNA.327-201ENST00000365201 102 ntBASIC1.61□□□□□ -2.15
CHMP4CQ96CF2 SNORA1-201ENST00000384107 130 ntBASIC1.61□□□□□ -2.15
CHMP4CQ96CF2 RNU6-1054P-201ENST00000411293 104 ntBASIC1.61□□□□□ -2.15
CHMP4CQ96CF2 AC108059.2-201ENST00000434626 151 ntBASIC1.61□□□□□ -2.15
CHMP4CQ96CF2 SEPT7P4-201ENST00000437076 306 ntBASIC1.61□□□□□ -2.15
CHMP4CQ96CF2 AC048334.1-201ENST00000477975 159 ntBASIC1.61□□□□□ -2.15
CHMP4CQ96CF2 SNORD36C-201ENST00000516733 66 ntBASIC1.61□□□□□ -2.15
CHMP4CQ96CF2 RNU6-861P-201ENST00000516745 106 ntBASIC1.61□□□□□ -2.15
CHMP4CQ96CF2 MIR4791-201ENST00000607666 84 ntBASIC1.61□□□□□ -2.15
CHMP4CQ96CF2 SNORA27-201ENST00000384323 126 ntBASIC1.6□□□□□ -2.15
CHMP4CQ96CF2 RNU6-955P-201ENST00000410497 104 ntBASIC1.6□□□□□ -2.15
CHMP4CQ96CF2 RNU6-938P-201ENST00000411285 103 ntBASIC1.6□□□□□ -2.15
CHMP4CQ96CF2 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.6□□□□□ -2.15
CHMP4CQ96CF2 RNU7-67P-201ENST00000459003 62 ntBASIC1.6□□□□□ -2.15
CHMP4CQ96CF2 AL365205.2-201ENST00000594586 68 ntBASIC1.6□□□□□ -2.15
CHMP4CQ96CF2 AC243994.1-201ENST00000618627 109 ntBASIC1.6□□□□□ -2.15
CHMP4CQ96CF2 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.6□□□□□ -2.15
CHMP4CQ96CF2 RNU6-978P-201ENST00000364371 103 ntBASIC1.59□□□□□ -2.15
CHMP4CQ96CF2 SNORA25.7-201ENST00000364375 127 ntBASIC1.59□□□□□ -2.15
CHMP4CQ96CF2 RNA5SP247-201ENST00000411181 105 ntBASIC1.59□□□□□ -2.15
CHMP4CQ96CF2 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.59□□□□□ -2.15
CHMP4CQ96CF2 RPS26P48-201ENST00000491713 339 ntBASIC1.59□□□□□ -2.15
CHMP4CQ96CF2 SNORA18.4-201ENST00000516440 124 ntBASIC1.59□□□□□ -2.15
CHMP4CQ96CF2 AC091895.1-201ENST00000624494 256 ntBASIC1.59□□□□□ -2.15
CHMP4CQ96CF2 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
CHMP4CQ96CF2 Y_RNA.240-201ENST00000364469 95 ntBASIC1.58□□□□□ -2.16
CHMP4CQ96CF2 RNU6-1292P-201ENST00000383856 107 ntBASIC1.58□□□□□ -2.16
CHMP4CQ96CF2 SNORD26-201ENST00000384147 75 ntBASIC1.58□□□□□ -2.16
CHMP4CQ96CF2 MIR222-201ENST00000384992 110 ntBASIC1.58□□□□□ -2.16
CHMP4CQ96CF2 RPS29P29-201ENST00000456396 171 ntBASIC1.58□□□□□ -2.16
CHMP4CQ96CF2 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
CHMP4CQ96CF2 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
CHMP4CQ96CF2 MIR103A2-201ENST00000362154 78 ntBASIC1.57□□□□□ -2.16
CHMP4CQ96CF2 SNORA25.3-201ENST00000363205 127 ntBASIC1.57□□□□□ -2.16
CHMP4CQ96CF2 RNU6-682P-201ENST00000363843 106 ntBASIC1.57□□□□□ -2.16
CHMP4CQ96CF2 Y_RNA.337-201ENST00000365312 102 ntBASIC1.57□□□□□ -2.16
CHMP4CQ96CF2 SNORD77.3-201ENST00000391113 65 ntBASIC1.57□□□□□ -2.16
CHMP4CQ96CF2 RNU1-123P-201ENST00000458950 160 ntBASIC1.57□□□□□ -2.16
CHMP4CQ96CF2 AC004223.1-201ENST00000479840 271 ntBASIC1.57□□□□□ -2.16
CHMP4CQ96CF2 RPS29P24-201ENST00000486345 171 ntBASIC1.57□□□□□ -2.16
CHMP4CQ96CF2 SNORA70.22-201ENST00000517160 124 ntBASIC1.57□□□□□ -2.16
CHMP4CQ96CF2 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.57□□□□□ -2.16
CHMP4CQ96CF2 AL353770.2-201ENST00000620024 78 ntBASIC1.57□□□□□ -2.16
CHMP4CQ96CF2 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.56□□□□□ -2.16
CHMP4CQ96CF2 RNA5SP327-201ENST00000362494 101 ntBASIC1.56□□□□□ -2.16
CHMP4CQ96CF2 RNU6-53P-201ENST00000365367 106 ntBASIC1.56□□□□□ -2.16
CHMP4CQ96CF2 RNU6-910P-201ENST00000390844 107 ntBASIC1.56□□□□□ -2.16
CHMP4CQ96CF2 RNA5SP127-201ENST00000411051 133 ntBASIC1.56□□□□□ -2.16
CHMP4CQ96CF2 RNU2-13P-201ENST00000515909 113 ntBASIC1.56□□□□□ -2.16
CHMP4CQ96CF2 MTND1P7-201ENST00000632801 297 ntBASIC1.56□□□□□ -2.16
CHMP4CQ96CF2 RNA5SP264-201ENST00000363115 107 ntBASIC1.55□□□□□ -2.16
CHMP4CQ96CF2 Y_RNA.393-201ENST00000383936 102 ntBASIC1.55□□□□□ -2.16
CHMP4CQ96CF2 Y_RNA.494-201ENST00000384432 111 ntBASIC1.55□□□□□ -2.16
CHMP4CQ96CF2 snoU13.25-201ENST00000458945 104 ntBASIC1.55□□□□□ -2.16
CHMP4CQ96CF2 RNU7-96P-201ENST00000459535 64 ntBASIC1.55□□□□□ -2.16
CHMP4CQ96CF2 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.55□□□□□ -2.16
CHMP4CQ96CF2 RNU7-53P-201ENST00000516705 60 ntBASIC1.55□□□□□ -2.16
CHMP4CQ96CF2 RNU6-958P-201ENST00000516995 106 ntBASIC1.55□□□□□ -2.16
CHMP4CQ96CF2 AC019288.1-201ENST00000557918 224 ntBASIC1.55□□□□□ -2.16
CHMP4CQ96CF2 MIR3668-201ENST00000582138 75 ntBASIC1.55□□□□□ -2.16
CHMP4CQ96CF2 MIR5197-201ENST00000583721 112 ntBASIC1.55□□□□□ -2.16
CHMP4CQ96CF2 Y_RNA.270-201ENST00000364693 104 ntBASIC1.54□□□□□ -2.16
CHMP4CQ96CF2 RNU6-597P-201ENST00000365620 102 ntBASIC1.54□□□□□ -2.16
CHMP4CQ96CF2 Y_RNA.440-201ENST00000384120 114 ntBASIC1.54□□□□□ -2.16
CHMP4CQ96CF2 RNU6-239P-201ENST00000390990 99 ntBASIC1.54□□□□□ -2.16
CHMP4CQ96CF2 snoU13.16-201ENST00000459350 104 ntBASIC1.54□□□□□ -2.16
CHMP4CQ96CF2 AL022345.2-201ENST00000606307 135 ntBASIC1.54□□□□□ -2.16
CHMP4CQ96CF2 MIR26B-201ENST00000362251 77 ntBASIC1.53□□□□□ -2.16
CHMP4CQ96CF2 RNU4-84P-201ENST00000364200 139 ntBASIC1.53□□□□□ -2.16
CHMP4CQ96CF2 SNORA25.8-201ENST00000364831 128 ntBASIC1.53□□□□□ -2.16
CHMP4CQ96CF2 SNORA24-201ENST00000384096 131 ntBASIC1.53□□□□□ -2.16
CHMP4CQ96CF2 SNORA25-201ENST00000384384 134 ntBASIC1.53□□□□□ -2.16
CHMP4CQ96CF2 SNORA80D-201ENST00000384488 135 ntBASIC1.53□□□□□ -2.16
CHMP4CQ96CF2 MIR342-201ENST00000362212 99 ntBASIC1.52□□□□□ -2.17
CHMP4CQ96CF2 RNU6-768P-201ENST00000384683 107 ntBASIC1.52□□□□□ -2.17
CHMP4CQ96CF2 MIR624-201ENST00000385217 97 ntBASIC1.52□□□□□ -2.17
CHMP4CQ96CF2 AL035398.1-201ENST00000430869 322 ntBASIC1.52□□□□□ -2.17
CHMP4CQ96CF2 RNU7-70P-201ENST00000516941 66 ntBASIC1.52□□□□□ -2.17
CHMP4CQ96CF2 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.52□□□□□ -2.17
CHMP4CQ96CF2 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.52□□□□□ -2.17
CHMP4CQ96CF2 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.52□□□□□ -2.17
CHMP4CQ96CF2 PRELID3BP2-201ENST00000605362 201 ntBASIC1.52□□□□□ -2.17
CHMP4CQ96CF2 MIR302B-201ENST00000362188 73 ntBASIC1.51□□□□□ -2.17
CHMP4CQ96CF2 SNORD114-27-201ENST00000363766 70 ntBASIC1.51□□□□□ -2.17
CHMP4CQ96CF2 Y_RNA.351-201ENST00000365436 96 ntBASIC1.51□□□□□ -2.17
CHMP4CQ96CF2 RNU5E-9P-201ENST00000411164 104 ntBASIC1.51□□□□□ -2.17
CHMP4CQ96CF2 AL591704.2-201ENST00000421658 181 ntBASIC1.51□□□□□ -2.17
CHMP4CQ96CF2 RNU7-80P-201ENST00000459562 61 ntBASIC1.51□□□□□ -2.17
CHMP4CQ96CF2 RNU6-998P-201ENST00000515894 101 ntBASIC1.51□□□□□ -2.17
CHMP4CQ96CF2 Y_RNA.226-201ENST00000364337 114 ntBASIC1.5□□□□□ -2.17
CHMP4CQ96CF2 Y_RNA.330-201ENST00000365230 109 ntBASIC1.5□□□□□ -2.17
CHMP4CQ96CF2 Y_RNA.454-201ENST00000384224 113 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms