Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RNU7-53P-201ENST00000516705 60 ntBASIC-0.02□□□□□ -2.41
LMX1AQ8TE12 RNU2-31P-201ENST00000516954 155 ntBASIC-0.02□□□□□ -2.41
LMX1AQ8TE12 MIR4290-201ENST00000583807 95 ntBASIC-0.02□□□□□ -2.41
LMX1AQ8TE12 SNORD58B-201ENST00000607313 66 ntBASIC-0.02□□□□□ -2.41
LMX1AQ8TE12 MIR7107-201ENST00000611489 80 ntBASIC-0.02□□□□□ -2.41
LMX1AQ8TE12 AL138825.1-201ENST00000618587 192 ntBASIC-0.02□□□□□ -2.41
LMX1AQ8TE12 MTND4LP32-201ENST00000636111 270 ntBASIC-0.02□□□□□ -2.41
LMX1AQ8TE12 MIR6828-201ENST00000636181 60 ntBASIC-0.02□□□□□ -2.41
LMX1AQ8TE12 Y_RNA.42-201ENST00000362660 108 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 Y_RNA.143-201ENST00000363520 106 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 Y_RNA.187-201ENST00000363918 113 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 RNU6-740P-201ENST00000364734 105 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 RNY3-201ENST00000365484 102 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 RNU6-597P-201ENST00000365620 102 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 Y_RNA.486-201ENST00000384398 107 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 RNU6-21P-201ENST00000384710 107 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 MIR518F-201ENST00000384973 87 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 MIR644A-201ENST00000385262 94 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 RNU6-763P-201ENST00000390865 106 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 RNU6-130P-201ENST00000411112 103 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 AC096949.1-201ENST00000412047 152 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 POLR2KP2-201ENST00000438155 177 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 AC023449.1-201ENST00000454464 154 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 NDUFAF4P4-201ENST00000454883 502 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 Y_RNA.637-201ENST00000459424 114 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 RNU6-848P-201ENST00000515948 107 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 RNU6-617P-201ENST00000516147 107 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 RNU6-473P-201ENST00000516164 107 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 MIR4752-201ENST00000579672 72 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 MIR8066-201ENST00000617280 78 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 AL606534.2-204ENST00000635008 178 ntBASIC-0.03□□□□□ -2.41
LMX1AQ8TE12 SNORA1.1-201ENST00000364671 133 ntBASIC-0.04□□□□□ -2.42
LMX1AQ8TE12 SNORD24-201ENST00000383884 75 ntBASIC-0.04□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.04□□□□□ -2.42
LMX1AQ8TE12 RNU6-127P-201ENST00000390897 107 ntBASIC-0.04□□□□□ -2.42
LMX1AQ8TE12 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC-0.04□□□□□ -2.42
LMX1AQ8TE12 MIR4662B-201ENST00000579498 81 ntBASIC-0.04□□□□□ -2.42
LMX1AQ8TE12 RPS29P30-201ENST00000600975 111 ntBASIC-0.04□□□□□ -2.42
LMX1AQ8TE12 AC092447.9-201ENST00000603395 144 ntBASIC-0.04□□□□□ -2.42
LMX1AQ8TE12 C8orf59P2-201ENST00000603441 271 ntBASIC-0.04□□□□□ -2.42
LMX1AQ8TE12 PART1_1.1-201ENST00000611761 217 ntBASIC-0.04□□□□□ -2.42
LMX1AQ8TE12 AC013791.1-201ENST00000616619 62 ntBASIC-0.04□□□□□ -2.42
LMX1AQ8TE12 AC104985.2-201ENST00000620598 500 ntBASIC-0.04□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.5-201ENST00000362334 102 ntBASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.39-201ENST00000362620 98 ntBASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 RNU6-1205P-201ENST00000363625 106 ntBASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.259-201ENST00000364619 101 ntBASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.813-201ENST00000364639 102 ntBASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 SNORD12C-201ENST00000386307 89 ntBASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 RNU6-876P-201ENST00000391295 104 ntBASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 RNU6-383P-201ENST00000410864 94 ntBASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 MTCO1P5-201ENST00000433573 344 ntBASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 AC108059.2-201ENST00000434626 151 ntBASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 MTCO2P24-201ENST00000515611 426 ntBASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 RNA5SP227-201ENST00000516184 113 ntBASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 NEAT1_2.1-201ENST00000620525 105 ntBASIC-0.05□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.32-201ENST00000362589 110 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 RNU6-888P-201ENST00000363010 101 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 RNU6-1309P-201ENST00000363305 108 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.248-201ENST00000364501 109 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 MIR643-201ENST00000385267 97 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 SNORD77.3-201ENST00000391113 65 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 SNORA26.6-201ENST00000391256 115 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 AC138393.2-201ENST00000414742 246 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 AL512326.2-201ENST00000426359 151 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 MTND1P14-201ENST00000427400 950 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 SEPT7P4-201ENST00000437076 306 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.631-201ENST00000459607 101 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 RNU6-998P-201ENST00000515894 101 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 RNU6-693P-201ENST00000516134 107 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 RNU6-504P-201ENST00000516568 104 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 SNORD36C-201ENST00000516733 66 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 RNA5SP268-201ENST00000516828 124 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 SNORA20.3-201ENST00000516880 132 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.715-201ENST00000517082 110 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 AL049861.1-201ENST00000603130 150 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 AC122108.2-201ENST00000611946 526 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 AC084781.2-201ENST00000615568 161 ntBASIC-0.06□□□□□ -2.42
LMX1AQ8TE12 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC-0.07□□□□□ -2.42
LMX1AQ8TE12 SNORD61-201ENST00000384252 73 ntBASIC-0.07□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.526-201ENST00000384572 110 ntBASIC-0.07□□□□□ -2.42
LMX1AQ8TE12 SUMO1P3-201ENST00000439961 304 ntBASIC-0.07□□□□□ -2.42
LMX1AQ8TE12 RNU7-96P-201ENST00000459535 64 ntBASIC-0.07□□□□□ -2.42
LMX1AQ8TE12 MIR5692C2-201ENST00000577959 77 ntBASIC-0.07□□□□□ -2.42
LMX1AQ8TE12 MIR5688-201ENST00000580619 83 ntBASIC-0.07□□□□□ -2.42
LMX1AQ8TE12 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.07□□□□□ -2.42
LMX1AQ8TE12 SNORA9.1-201ENST00000362412 131 ntBASIC-0.08□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.66-201ENST00000362862 102 ntBASIC-0.08□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.80-201ENST00000362996 102 ntBASIC-0.08□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.274-201ENST00000364714 101 ntBASIC-0.08□□□□□ -2.42
LMX1AQ8TE12 RNU6-923P-201ENST00000364753 107 ntBASIC-0.08□□□□□ -2.42
LMX1AQ8TE12 RNU6-302P-201ENST00000365249 107 ntBASIC-0.08□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.471-201ENST00000384312 102 ntBASIC-0.08□□□□□ -2.42
LMX1AQ8TE12 Y_RNA.485-201ENST00000384395 102 ntBASIC-0.08□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms