Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 Y_RNA.721-201ENST00000517207 102 ntBASIC0.27□□□□□ -2.37
NIPAL3Q6P499 AC100767.1-201ENST00000528178 123 ntBASIC0.27□□□□□ -2.37
NIPAL3Q6P499 AC090897.1-201ENST00000580909 226 ntBASIC0.27□□□□□ -2.37
NIPAL3Q6P499 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.26□□□□□ -2.37
NIPAL3Q6P499 SNORD24-201ENST00000383884 75 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 Y_RNA.389-201ENST00000383924 113 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 Y_RNA.431-201ENST00000384086 102 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 Y_RNA.645-201ENST00000391229 102 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 SNORD100-201ENST00000408573 76 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 MIR1252-201ENST00000408861 65 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 RNU6-938P-201ENST00000411285 103 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.26□□□□□ -2.37
NIPAL3Q6P499 HMGN1P33-201ENST00000432945 451 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 RNU7-102P-201ENST00000458948 62 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 RNU7-185P-201ENST00000459215 60 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 MTCO2P24-201ENST00000515611 426 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.26□□□□□ -2.37
NIPAL3Q6P499 MIR4801-201ENST00000582704 82 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 AC006006.1-201ENST00000603082 144 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 Y_RNA.802-201ENST00000614892 130 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.26□□□□□ -2.37
NIPAL3Q6P499 uc_338.16-201ENST00000621804 95 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.26□□□□□ -2.37
NIPAL3Q6P499 AL589743.1-201ENST00000551932 2712 ntBASIC0.26□□□□□ -2.37
NIPAL3Q6P499 RNU6-1309P-201ENST00000363305 108 ntBASIC0.25□□□□□ -2.37
NIPAL3Q6P499 RNU6-1327P-201ENST00000365302 105 ntBASIC0.25□□□□□ -2.37
NIPAL3Q6P499 RNU6-326P-201ENST00000365480 107 ntBASIC0.25□□□□□ -2.37
NIPAL3Q6P499 Y_RNA.394-201ENST00000383942 103 ntBASIC0.25□□□□□ -2.37
NIPAL3Q6P499 RNU6-662P-201ENST00000384253 104 ntBASIC0.25□□□□□ -2.37
NIPAL3Q6P499 MIR526A2-201ENST00000390198 65 ntBASIC0.25□□□□□ -2.37
NIPAL3Q6P499 SNORA40.8-201ENST00000411034 126 ntBASIC0.25□□□□□ -2.37
NIPAL3Q6P499 snoU13.2-201ENST00000459201 104 ntBASIC0.25□□□□□ -2.37
NIPAL3Q6P499 Y_RNA.673-201ENST00000516306 88 ntBASIC0.25□□□□□ -2.37
NIPAL3Q6P499 SNORD36C-201ENST00000516733 66 ntBASIC0.25□□□□□ -2.37
NIPAL3Q6P499 RNU6-1270P-201ENST00000517128 108 ntBASIC0.25□□□□□ -2.37
NIPAL3Q6P499 RNU7-156P-201ENST00000517214 74 ntBASIC0.25□□□□□ -2.37
NIPAL3Q6P499 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.25□□□□□ -2.37
NIPAL3Q6P499 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.25□□□□□ -2.37
NIPAL3Q6P499 Y_RNA.118-201ENST00000363300 101 ntBASIC0.24□□□□□ -2.37
NIPAL3Q6P499 RNA5SP517-201ENST00000364724 117 ntBASIC0.24□□□□□ -2.37
NIPAL3Q6P499 SNORD61-201ENST00000384252 73 ntBASIC0.24□□□□□ -2.37
NIPAL3Q6P499 MIR548A2-201ENST00000384956 97 ntBASIC0.24□□□□□ -2.37
NIPAL3Q6P499 RNU6-602P-201ENST00000411155 105 ntBASIC0.24□□□□□ -2.37
NIPAL3Q6P499 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.24□□□□□ -2.37
NIPAL3Q6P499 RNU6-504P-201ENST00000516568 104 ntBASIC0.24□□□□□ -2.37
NIPAL3Q6P499 MIR5688-201ENST00000580619 83 ntBASIC0.24□□□□□ -2.37
NIPAL3Q6P499 AC008608.1-201ENST00000603910 127 ntBASIC0.24□□□□□ -2.37
NIPAL3Q6P499 RNU6-888P-201ENST00000363010 101 ntBASIC0.23□□□□□ -2.37
NIPAL3Q6P499 Y_RNA.105-201ENST00000363182 111 ntBASIC0.23□□□□□ -2.37
NIPAL3Q6P499 RNA5SP117-201ENST00000365294 118 ntBASIC0.23□□□□□ -2.37
NIPAL3Q6P499 SNORD42.2-201ENST00000365570 69 ntBASIC0.23□□□□□ -2.37
NIPAL3Q6P499 MIR518A1-201ENST00000385068 85 ntBASIC0.23□□□□□ -2.37
NIPAL3Q6P499 AC022028.1-201ENST00000412054 408 ntBASIC0.23□□□□□ -2.37
NIPAL3Q6P499 RNU7-96P-201ENST00000459535 64 ntBASIC0.23□□□□□ -2.37
NIPAL3Q6P499 Y_RNA.631-201ENST00000459607 101 ntBASIC0.23□□□□□ -2.37
NIPAL3Q6P499 RNA5SP94-201ENST00000516917 108 ntBASIC0.23□□□□□ -2.37
NIPAL3Q6P499 AC022523.2-201ENST00000561045 150 ntBASIC0.23□□□□□ -2.37
NIPAL3Q6P499 Y_RNA.7-201ENST00000362352 102 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 Y_RNA.31-201ENST00000362574 102 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 SNORD114-23-201ENST00000363536 72 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 RNU4-10P-201ENST00000364383 140 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 Y_RNA.380-201ENST00000365663 111 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 MT-TF-201ENST00000387314 71 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 SNORD77.3-201ENST00000391113 65 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 SNORA26-201ENST00000391286 122 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 MIR548I3-201ENST00000408378 149 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 RNU6-121P-201ENST00000410525 99 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 AL138752.1-201ENST00000452964 351 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 RNU2-11P-201ENST00000459191 187 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 SNORA27.4-201ENST00000516650 95 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 SNORD92-201ENST00000585078 85 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.22□□□□□ -2.37
NIPAL3Q6P499 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.22□□□□□ -2.37
NIPAL3Q6P499 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
NIPAL3Q6P499 MIR103A1-201ENST00000362165 78 ntBASIC0.21□□□□□ -2.38
NIPAL3Q6P499 Y_RNA.419-201ENST00000384041 102 ntBASIC0.21□□□□□ -2.38
NIPAL3Q6P499 RNY3P14-201ENST00000384309 102 ntBASIC0.21□□□□□ -2.38
NIPAL3Q6P499 Y_RNA.541-201ENST00000384640 113 ntBASIC0.21□□□□□ -2.38
NIPAL3Q6P499 SNORA8.3-201ENST00000384679 139 ntBASIC0.21□□□□□ -2.38
NIPAL3Q6P499 AL731563.1-201ENST00000442202 214 ntBASIC0.21□□□□□ -2.38
NIPAL3Q6P499 RNY3P15-201ENST00000516297 97 ntBASIC0.21□□□□□ -2.38
NIPAL3Q6P499 AP003733.2-201ENST00000529409 171 ntBASIC0.21□□□□□ -2.38
NIPAL3Q6P499 AL008718.3-201ENST00000610217 321 ntBASIC0.21□□□□□ -2.38
NIPAL3Q6P499 PVT1_3.1-201ENST00000620853 95 ntBASIC0.21□□□□□ -2.38
NIPAL3Q6P499 snoU18.1-201ENST00000629629 71 ntBASIC0.21□□□□□ -2.38
NIPAL3Q6P499 Y_RNA.217-201ENST00000364214 105 ntBASIC0.2□□□□□ -2.38
NIPAL3Q6P499 SNORD12C-201ENST00000386307 89 ntBASIC0.2□□□□□ -2.38
NIPAL3Q6P499 SNRPGP12-201ENST00000449481 213 ntBASIC0.2□□□□□ -2.38
NIPAL3Q6P499 Y_RNA.641-201ENST00000459414 105 ntBASIC0.2□□□□□ -2.38
NIPAL3Q6P499 AC108740.1-201ENST00000498629 225 ntBASIC0.2□□□□□ -2.38
NIPAL3Q6P499 RNU6-998P-201ENST00000515894 101 ntBASIC0.2□□□□□ -2.38
NIPAL3Q6P499 RNU6-988P-201ENST00000519081 107 ntBASIC0.2□□□□□ -2.38
NIPAL3Q6P499 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.2□□□□□ -2.38
NIPAL3Q6P499 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.2□□□□□ -2.38
NIPAL3Q6P499 MIR5093-201ENST00000583199 100 ntBASIC0.2□□□□□ -2.38
NIPAL3Q6P499 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.19□□□□□ -2.38
NIPAL3Q6P499 MIR342-201ENST00000362212 99 ntBASIC0.19□□□□□ -2.38
NIPAL3Q6P499 RNU6-349P-201ENST00000362402 107 ntBASIC0.19□□□□□ -2.38
NIPAL3Q6P499 Y_RNA.24-201ENST00000362508 103 ntBASIC0.19□□□□□ -2.38
NIPAL3Q6P499 Y_RNA.28-201ENST00000362554 111 ntBASIC0.19□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 197.1 ms