Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RNU6-1137P-201ENST00000517073 99 ntBASIC0.78□□□□□ -2.28
HMGB1P09429 MIR3612-201ENST00000579753 87 ntBASIC0.78□□□□□ -2.28
HMGB1P09429 MIR8055-201ENST00000610739 97 ntBASIC0.78□□□□□ -2.28
HMGB1P09429 uc_338.6-201ENST00000613544 171 ntBASIC0.78□□□□□ -2.28
HMGB1P09429 MIR8070-201ENST00000616510 88 ntBASIC0.78□□□□□ -2.28
HMGB1P09429 MIR6740-201ENST00000618268 113 ntBASIC0.78□□□□□ -2.28
HMGB1P09429 RNU6-888P-201ENST00000363010 101 ntBASIC0.77□□□□□ -2.29
HMGB1P09429 SNORD114-22-201ENST00000365423 72 ntBASIC0.77□□□□□ -2.29
HMGB1P09429 MIR588-201ENST00000384900 83 ntBASIC0.77□□□□□ -2.29
HMGB1P09429 MIR626-201ENST00000385032 94 ntBASIC0.77□□□□□ -2.29
HMGB1P09429 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.77□□□□□ -2.29
HMGB1P09429 CYP3A137P-201ENST00000562436 69 ntBASIC0.77□□□□□ -2.29
HMGB1P09429 AL356055.1-201ENST00000602528 446 ntBASIC0.77□□□□□ -2.29
HMGB1P09429 Z97988.1-201ENST00000637697 135 ntBASIC0.77□□□□□ -2.29
HMGB1P09429 Y_RNA.275-201ENST00000364726 110 ntBASIC0.76□□□□□ -2.29
HMGB1P09429 RNU6-1203P-201ENST00000410703 110 ntBASIC0.76□□□□□ -2.29
HMGB1P09429 Y_RNA.622-201ENST00000411091 108 ntBASIC0.76□□□□□ -2.29
HMGB1P09429 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.76□□□□□ -2.29
HMGB1P09429 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.76□□□□□ -2.29
HMGB1P09429 Y_RNA.4-201ENST00000362333 112 ntBASIC0.75□□□□□ -2.29
HMGB1P09429 MIR938-201ENST00000401216 83 ntBASIC0.75□□□□□ -2.29
HMGB1P09429 AF228730.3-201ENST00000436691 102 ntBASIC0.75□□□□□ -2.29
HMGB1P09429 RNU2-11P-201ENST00000459191 187 ntBASIC0.75□□□□□ -2.29
HMGB1P09429 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.75□□□□□ -2.29
HMGB1P09429 MIR18A-201ENST00000362310 71 ntBASIC0.74□□□□□ -2.29
HMGB1P09429 Y_RNA.91-201ENST00000363042 107 ntBASIC0.74□□□□□ -2.29
HMGB1P09429 RNU6-364P-201ENST00000384387 107 ntBASIC0.74□□□□□ -2.29
HMGB1P09429 MIR508-201ENST00000384857 115 ntBASIC0.74□□□□□ -2.29
HMGB1P09429 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.74□□□□□ -2.29
HMGB1P09429 AC133485.1-201ENST00000567176 124 ntBASIC0.74□□□□□ -2.29
HMGB1P09429 AC138907.6-201ENST00000568401 126 ntBASIC0.74□□□□□ -2.29
HMGB1P09429 Y_RNA.44-201ENST00000362676 108 ntBASIC0.73□□□□□ -2.29
HMGB1P09429 MT-TT-201ENST00000387460 66 ntBASIC0.73□□□□□ -2.29
HMGB1P09429 SNORD77.3-201ENST00000391113 65 ntBASIC0.73□□□□□ -2.29
HMGB1P09429 MIR548I3-201ENST00000408378 149 ntBASIC0.73□□□□□ -2.29
HMGB1P09429 RNU6-1165P-201ENST00000410119 107 ntBASIC0.73□□□□□ -2.29
HMGB1P09429 MIR18B-201ENST00000454574 71 ntBASIC0.73□□□□□ -2.29
HMGB1P09429 RNU7-56P-201ENST00000458744 62 ntBASIC0.73□□□□□ -2.29
HMGB1P09429 RNU7-96P-201ENST00000459535 64 ntBASIC0.73□□□□□ -2.29
HMGB1P09429 uc_338.17-201ENST00000619633 179 ntBASIC0.73□□□□□ -2.29
HMGB1P09429 Y_RNA.634-201ENST00000364811 113 ntBASIC0.72□□□□□ -2.29
HMGB1P09429 RNU6-1189P-201ENST00000383958 107 ntBASIC0.72□□□□□ -2.29
HMGB1P09429 Y_RNA.432-201ENST00000384087 111 ntBASIC0.72□□□□□ -2.29
HMGB1P09429 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.72□□□□□ -2.29
HMGB1P09429 RNU6-985P-201ENST00000410182 104 ntBASIC0.72□□□□□ -2.29
HMGB1P09429 RNU6-602P-201ENST00000411155 105 ntBASIC0.72□□□□□ -2.29
HMGB1P09429 AC004812.1-201ENST00000540773 146 ntBASIC0.72□□□□□ -2.29
HMGB1P09429 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC0.72□□□□□ -2.29
HMGB1P09429 MIR302B-201ENST00000362188 73 ntBASIC0.71□□□□□ -2.3
HMGB1P09429 Y_RNA.191-201ENST00000363972 113 ntBASIC0.71□□□□□ -2.3
HMGB1P09429 Y_RNA.199-201ENST00000364014 102 ntBASIC0.71□□□□□ -2.3
HMGB1P09429 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
HMGB1P09429 RNU6-639P-201ENST00000384074 107 ntBASIC0.71□□□□□ -2.3
HMGB1P09429 RNU6-713P-201ENST00000384761 107 ntBASIC0.71□□□□□ -2.3
HMGB1P09429 MIR1257-201ENST00000408490 117 ntBASIC0.71□□□□□ -2.3
HMGB1P09429 RNU6-1190P-201ENST00000410811 104 ntBASIC0.71□□□□□ -2.3
HMGB1P09429 Y_RNA.66-201ENST00000362862 102 ntBASIC0.7□□□□□ -2.3
HMGB1P09429 RNU6-797P-201ENST00000363101 109 ntBASIC0.7□□□□□ -2.3
HMGB1P09429 RNU6-740P-201ENST00000364734 105 ntBASIC0.7□□□□□ -2.3
HMGB1P09429 SNORA25.9-201ENST00000365087 128 ntBASIC0.7□□□□□ -2.3
HMGB1P09429 RNU6-679P-201ENST00000391003 106 ntBASIC0.7□□□□□ -2.3
HMGB1P09429 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.7□□□□□ -2.3
HMGB1P09429 RNU2-55P-201ENST00000411146 174 ntBASIC0.7□□□□□ -2.3
HMGB1P09429 TRBVB-201ENST00000477100 408 ntBASIC0.7□□□□□ -2.3
HMGB1P09429 RN7SKP12-201ENST00000516275 143 ntBASIC0.7□□□□□ -2.3
HMGB1P09429 SNORA33.2-201ENST00000365413 134 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU4-45P-201ENST00000365469 141 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 Y_RNA.410-201ENST00000383992 113 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-1319P-201ENST00000390855 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-747P-201ENST00000390928 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-241P-201ENST00000391148 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-447P-201ENST00000410293 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-1118P-201ENST00000410382 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-1076P-201ENST00000410397 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-355P-201ENST00000410427 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-791P-201ENST00000410467 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-705P-201ENST00000410601 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-1100P-201ENST00000410691 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-860P-201ENST00000410860 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-1217P-201ENST00000411276 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-785P-201ENST00000411324 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 snoU13.2-201ENST00000459201 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 RNU6-998P-201ENST00000515894 101 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 MIR4452-201ENST00000583004 71 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 U6.90-201ENST00000614007 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 U6.70-201ENST00000620287 104 ntBASIC0.69□□□□□ -2.3
HMGB1P09429 Y_RNA.237-201ENST00000364439 102 ntBASIC0.68□□□□□ -2.3
HMGB1P09429 MIR92A1-201ENST00000385233 78 ntBASIC0.68□□□□□ -2.3
HMGB1P09429 SNORD12C-201ENST00000386307 89 ntBASIC0.68□□□□□ -2.3
HMGB1P09429 RNU7-185P-201ENST00000459215 60 ntBASIC0.68□□□□□ -2.3
HMGB1P09429 RPS29P1-201ENST00000465274 159 ntBASIC0.68□□□□□ -2.3
HMGB1P09429 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.68□□□□□ -2.3
HMGB1P09429 Y_RNA.304-201ENST00000365011 112 ntBASIC0.67□□□□□ -2.3
HMGB1P09429 RNU6-484P-201ENST00000384016 107 ntBASIC0.67□□□□□ -2.3
HMGB1P09429 MIR125B2-201ENST00000385128 89 ntBASIC0.67□□□□□ -2.3
HMGB1P09429 AL606845.1-201ENST00000404881 255 ntBASIC0.67□□□□□ -2.3
HMGB1P09429 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.67□□□□□ -2.3
HMGB1P09429 SNRPGP8-201ENST00000454064 226 ntBASIC0.67□□□□□ -2.3
HMGB1P09429 Y_RNA.679-201ENST00000516416 91 ntBASIC0.67□□□□□ -2.3
HMGB1P09429 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 178.2 ms