Protein–RNA interactions for Protein: P03897

MT-ND3, NADH-ubiquinone oxidoreductase chain 3, humanhuman

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND3P03897 Y_RNA.5-201ENST00000362334 102 ntBASIC0.11□□□□□ -2.39
MT-ND3P03897 Y_RNA.37-201ENST00000362606 108 ntBASIC0.11□□□□□ -2.39
MT-ND3P03897 SNORD113-8-201ENST00000363497 74 ntBASIC0.11□□□□□ -2.39
MT-ND3P03897 SNORD24-201ENST00000383884 75 ntBASIC0.11□□□□□ -2.39
MT-ND3P03897 RNU6-815P-201ENST00000384080 113 ntBASIC0.11□□□□□ -2.39
MT-ND3P03897 Y_RNA.587-201ENST00000391210 103 ntBASIC0.11□□□□□ -2.39
MT-ND3P03897 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.11□□□□□ -2.39
MT-ND3P03897 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.11□□□□□ -2.39
MT-ND3P03897 MIR3678-201ENST00000578455 94 ntBASIC0.11□□□□□ -2.39
MT-ND3P03897 MIR2909-201ENST00000617113 69 ntBASIC0.11□□□□□ -2.39
MT-ND3P03897 AC078938.1-201ENST00000620993 318 ntBASIC0.11□□□□□ -2.39
MT-ND3P03897 RNU4-90P-201ENST00000362773 141 ntBASIC0.1□□□□□ -2.39
MT-ND3P03897 Y_RNA.418-201ENST00000384029 102 ntBASIC0.1□□□□□ -2.39
MT-ND3P03897 SNORA8.2-201ENST00000384372 139 ntBASIC0.1□□□□□ -2.39
MT-ND3P03897 Y_RNA.505-201ENST00000384489 102 ntBASIC0.1□□□□□ -2.39
MT-ND3P03897 Y_RNA.569-201ENST00000384749 103 ntBASIC0.1□□□□□ -2.39
MT-ND3P03897 RNU6-383P-201ENST00000410864 94 ntBASIC0.1□□□□□ -2.39
MT-ND3P03897 RNU6-602P-201ENST00000411155 105 ntBASIC0.1□□□□□ -2.39
MT-ND3P03897 RNU6-693P-201ENST00000516134 107 ntBASIC0.1□□□□□ -2.39
MT-ND3P03897 AC007751.1-201ENST00000529260 376 ntBASIC0.1□□□□□ -2.39
MT-ND3P03897 SNORA63.7-201ENST00000365579 123 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 MIR563-201ENST00000385080 79 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 MIR1302-11-201ENST00000408051 138 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 MIR1302-9-201ENST00000408365 138 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 MIR1302-10-201ENST00000408734 138 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.09□□□□□ -2.4
MT-ND3P03897 AC073261.1-201ENST00000429409 121 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 RNU7-96P-201ENST00000459535 64 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 MIR5692C2-201ENST00000577959 77 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 MIR5688-201ENST00000580619 83 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 MIR1302-2-201ENST00000607096 138 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 AC006157.1-201ENST00000611750 366 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 PART1_1.1-201ENST00000611761 217 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 AC122108.2-201ENST00000611946 526 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 MIR376A1-201ENST00000616574 68 ntBASIC0.09□□□□□ -2.4
MT-ND3P03897 Y_RNA.80-201ENST00000362996 102 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 RNU6-1309P-201ENST00000363305 108 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 SNORA72.1-201ENST00000363485 129 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 Y_RNA.424-201ENST00000384063 103 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 Y_RNA.485-201ENST00000384395 102 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 Y_RNA.486-201ENST00000384398 107 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 Y_RNA.567-201ENST00000384736 106 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 SNORD77.3-201ENST00000391113 65 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 RNU6-130P-201ENST00000411112 103 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 Y_RNA.681-201ENST00000516445 113 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 RNU6-365P-201ENST00000517113 106 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 AC069113.3-201ENST00000521019 150 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 MIR4768-201ENST00000585270 74 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 RAC1P9-201ENST00000604990 392 ntBASIC0.08□□□□□ -2.4
MT-ND3P03897 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.07□□□□□ -2.4
MT-ND3P03897 Y_RNA.813-201ENST00000364639 102 ntBASIC0.07□□□□□ -2.4
MT-ND3P03897 Y_RNA.445-201ENST00000384168 102 ntBASIC0.07□□□□□ -2.4
MT-ND3P03897 RNU6-938P-201ENST00000411285 103 ntBASIC0.07□□□□□ -2.4
MT-ND3P03897 MRPS35P2-201ENST00000508242 191 ntBASIC0.07□□□□□ -2.4
MT-ND3P03897 RNU6-469P-201ENST00000516253 101 ntBASIC0.07□□□□□ -2.4
MT-ND3P03897 RNU2-31P-201ENST00000516954 155 ntBASIC0.07□□□□□ -2.4
MT-ND3P03897 AC100767.1-201ENST00000528178 123 ntBASIC0.07□□□□□ -2.4
MT-ND3P03897 AC112693.2-201ENST00000556538 232 ntBASIC0.07□□□□□ -2.4
MT-ND3P03897 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.06□□□□□ -2.4
MT-ND3P03897 Y_RNA.280-201ENST00000364765 112 ntBASIC0.06□□□□□ -2.4
MT-ND3P03897 SNORA26-201ENST00000391286 122 ntBASIC0.06□□□□□ -2.4
MT-ND3P03897 Y_RNA.637-201ENST00000459424 114 ntBASIC0.06□□□□□ -2.4
MT-ND3P03897 Y_RNA.183-201ENST00000363882 113 ntBASIC0.05□□□□□ -2.4
MT-ND3P03897 Y_RNA.293-201ENST00000364908 93 ntBASIC0.05□□□□□ -2.4
MT-ND3P03897 MIR548I3-201ENST00000408378 149 ntBASIC0.05□□□□□ -2.4
MT-ND3P03897 RNU2-59P-201ENST00000410482 191 ntBASIC0.05□□□□□ -2.4
MT-ND3P03897 Y_RNA.602-201ENST00000410535 92 ntBASIC0.05□□□□□ -2.4
MT-ND3P03897 HMGN1P33-201ENST00000432945 451 ntBASIC0.05□□□□□ -2.4
MT-ND3P03897 RBMX2P4-201ENST00000441256 376 ntBASIC0.05□□□□□ -2.4
MT-ND3P03897 RNU6-1046P-201ENST00000516538 107 ntBASIC0.05□□□□□ -2.4
MT-ND3P03897 RNU6-504P-201ENST00000516568 104 ntBASIC0.05□□□□□ -2.4
MT-ND3P03897 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.05□□□□□ -2.4
MT-ND3P03897 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.05□□□□□ -2.4
MT-ND3P03897 MIR5190-201ENST00000581537 80 ntBASIC0.05□□□□□ -2.4
MT-ND3P03897 RNU6-888P-201ENST00000363010 101 ntBASIC0.04□□□□□ -2.4
MT-ND3P03897 MIR526A2-201ENST00000390198 65 ntBASIC0.04□□□□□ -2.4
MT-ND3P03897 SNORD115-46-201ENST00000390982 71 ntBASIC0.04□□□□□ -2.4
MT-ND3P03897 RNA5SP261-201ENST00000410536 106 ntBASIC0.04□□□□□ -2.4
MT-ND3P03897 HSPE1P25-201ENST00000455484 251 ntBASIC0.04□□□□□ -2.4
MT-ND3P03897 Y_RNA.631-201ENST00000459607 101 ntBASIC0.04□□□□□ -2.4
MT-ND3P03897 MTCO2P24-201ENST00000515611 426 ntBASIC0.04□□□□□ -2.4
MT-ND3P03897 AP003733.2-201ENST00000529409 171 ntBASIC0.04□□□□□ -2.4
MT-ND3P03897 AC037487.3-201ENST00000606668 112 ntBASIC0.04□□□□□ -2.4
MT-ND3P03897 AC090574.1-201ENST00000623186 233 ntBASIC0.04□□□□□ -2.4
MT-ND3P03897 MIR30D-201ENST00000362283 70 ntBASIC0.03□□□□□ -2.4
MT-ND3P03897 RNU6-1272P-201ENST00000362776 107 ntBASIC0.03□□□□□ -2.4
MT-ND3P03897 Y_RNA.410-201ENST00000383992 113 ntBASIC0.03□□□□□ -2.4
MT-ND3P03897 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.03□□□□□ -2.4
MT-ND3P03897 RPL39P25-201ENST00000449384 154 ntBASIC0.03□□□□□ -2.4
MT-ND3P03897 RNU2-11P-201ENST00000459191 187 ntBASIC0.03□□□□□ -2.4
MT-ND3P03897 RNU6-998P-201ENST00000515894 101 ntBASIC0.03□□□□□ -2.4
MT-ND3P03897 AC133485.4-201ENST00000561835 220 ntBASIC0.03□□□□□ -2.4
MT-ND3P03897 SNORA36.1-201ENST00000363424 132 ntBASIC0.02□□□□□ -2.41
MT-ND3P03897 Y_RNA.197-201ENST00000364004 102 ntBASIC0.02□□□□□ -2.41
MT-ND3P03897 RNU6-514P-201ENST00000384208 107 ntBASIC0.02□□□□□ -2.41
MT-ND3P03897 SNORD61-201ENST00000384252 73 ntBASIC0.02□□□□□ -2.41
MT-ND3P03897 SNORD36C-201ENST00000516733 66 ntBASIC0.02□□□□□ -2.41
MT-ND3P03897 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.02□□□□□ -2.41
MT-ND3P03897 AC112487.2-201ENST00000637950 304 ntBASIC0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms