Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 AC244023.1-201ENST00000426884 112 ntBASIC0.53□□□□□ -2.32
ZCCHC3Q9NUD5 RNU7-73P-201ENST00000458743 63 ntBASIC0.53□□□□□ -2.32
ZCCHC3Q9NUD5 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.53□□□□□ -2.32
ZCCHC3Q9NUD5 AC242498.1-201ENST00000604134 111 ntBASIC0.53□□□□□ -2.32
ZCCHC3Q9NUD5 snoU18.1-201ENST00000629629 71 ntBASIC0.53□□□□□ -2.32
ZCCHC3Q9NUD5 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.191-201ENST00000363972 113 ntBASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6-806P-201ENST00000365147 105 ntBASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 SNORD24-201ENST00000383884 75 ntBASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 MIR518F-201ENST00000384973 87 ntBASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 SNORA40.5-201ENST00000391061 128 ntBASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6-177P-201ENST00000411257 104 ntBASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6-1143P-201ENST00000516125 104 ntBASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6-693P-201ENST00000516134 107 ntBASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6-977P-201ENST00000516411 103 ntBASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 SNORA18.4-201ENST00000516440 124 ntBASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6-126P-201ENST00000516685 103 ntBASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 AP003484.1-201ENST00000530974 250 ntBASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.802-201ENST00000614892 130 ntBASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.52□□□□□ -2.33
ZCCHC3Q9NUD5 UBE2WP1-201ENST00000362030 340 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.37-201ENST00000362606 108 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.138-201ENST00000363462 102 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.164-201ENST00000363709 102 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.210-201ENST00000364161 110 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 SNORA36.2-201ENST00000384004 127 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.527-201ENST00000384573 102 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.535-201ENST00000384612 99 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6-1237P-201ENST00000384777 107 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 MIR548A2-201ENST00000384956 97 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 MIR520H-201ENST00000385126 88 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 MIR548P-201ENST00000408336 84 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6-958P-201ENST00000516995 106 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 AP003733.2-201ENST00000529409 171 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 MIR4771-2-201ENST00000577758 74 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 MIR4714-201ENST00000580728 77 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 MIR4771-1-201ENST00000582617 74 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 Z97988.1-201ENST00000637697 135 ntBASIC0.51□□□□□ -2.33
ZCCHC3Q9NUD5 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.16-201ENST00000362421 102 ntBASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.26-201ENST00000362539 101 ntBASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 SNORA63C-201ENST00000364578 129 ntBASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 MIR520F-201ENST00000384824 87 ntBASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6-913P-201ENST00000390913 95 ntBASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 AL731563.1-201ENST00000442202 214 ntBASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 RNU7-62P-201ENST00000458856 62 ntBASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 MIR4680-201ENST00000580906 66 ntBASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 MIR4452-201ENST00000583004 71 ntBASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 AC006006.1-201ENST00000603082 144 ntBASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 MIR8055-201ENST00000610739 97 ntBASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.61-201ENST00000362835 102 ntBASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.152-201ENST00000363578 100 ntBASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 RNU4-10P-201ENST00000364383 140 ntBASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 SNORA25.9-201ENST00000365087 128 ntBASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 RNY1P8-201ENST00000383970 114 ntBASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 SNORD61-201ENST00000384252 73 ntBASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 SNORA27-201ENST00000384323 126 ntBASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 AC015818.7-201ENST00000428754 109 ntBASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 AC087499.7-201ENST00000441958 109 ntBASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 RNU7-53P-201ENST00000516705 60 ntBASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6-365P-201ENST00000517113 106 ntBASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 MIR4804-201ENST00000581683 73 ntBASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.49□□□□□ -2.33
ZCCHC3Q9NUD5 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.64-201ENST00000362845 102 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6-888P-201ENST00000363010 101 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.84-201ENST00000363011 104 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 RNU5E-4P-201ENST00000364931 120 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 SNORA8.3-201ENST00000384679 139 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 SNORD38B-201ENST00000384690 67 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 MIR140-201ENST00000385282 100 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 RPS29P24-201ENST00000486345 171 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 SERF1AP1-201ENST00000514575 187 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 RN7SKP12-201ENST00000516275 143 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 SNORD36C-201ENST00000516733 66 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 AC100767.1-201ENST00000528178 123 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 MIR4676-201ENST00000583078 72 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 MIR3171-201ENST00000584270 74 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 Z83818.1-201ENST00000603584 150 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 MIR6788-201ENST00000618842 66 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 SNORD38B-202ENST00000625943 69 ntBASIC0.48□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.24-201ENST00000362508 103 ntBASIC0.47□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6-211P-201ENST00000384047 107 ntBASIC0.47□□□□□ -2.33
ZCCHC3Q9NUD5 MTCO2P12-201ENST00000427426 682 ntBASIC0.47□□□□□ -2.33
ZCCHC3Q9NUD5 AL157398.1-201ENST00000452981 186 ntBASIC0.47□□□□□ -2.33
ZCCHC3Q9NUD5 RNU6-504P-201ENST00000516568 104 ntBASIC0.47□□□□□ -2.33
ZCCHC3Q9NUD5 AC020891.4-201ENST00000605745 93 ntBASIC0.47□□□□□ -2.33
ZCCHC3Q9NUD5 MIR6740-201ENST00000618268 113 ntBASIC0.47□□□□□ -2.33
ZCCHC3Q9NUD5 Y_RNA.153-201ENST00000363615 91 ntBASIC0.46□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 255 ms