Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.25□□□□□ -2.37
HDDC3Q8N4P3 uc_338.16-201ENST00000621804 95 ntBASIC0.25□□□□□ -2.37
HDDC3Q8N4P3 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.24□□□□□ -2.37
HDDC3Q8N4P3 Y_RNA.14-201ENST00000362415 103 ntBASIC0.24□□□□□ -2.37
HDDC3Q8N4P3 Y_RNA.252-201ENST00000364556 101 ntBASIC0.24□□□□□ -2.37
HDDC3Q8N4P3 Y_RNA.286-201ENST00000364813 102 ntBASIC0.24□□□□□ -2.37
HDDC3Q8N4P3 Y_RNA.476-201ENST00000384347 108 ntBASIC0.24□□□□□ -2.37
HDDC3Q8N4P3 MIR329-2-201ENST00000385029 84 ntBASIC0.24□□□□□ -2.37
HDDC3Q8N4P3 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.24□□□□□ -2.37
HDDC3Q8N4P3 RNU7-152P-201ENST00000458982 64 ntBASIC0.24□□□□□ -2.37
HDDC3Q8N4P3 Y_RNA.632-201ENST00000459189 102 ntBASIC0.24□□□□□ -2.37
HDDC3Q8N4P3 AC010655.3-201ENST00000478818 450 ntBASIC0.24□□□□□ -2.37
HDDC3Q8N4P3 AC091959.1-201ENST00000495857 238 ntBASIC0.24□□□□□ -2.37
HDDC3Q8N4P3 AC022140.2-201ENST00000623500 188 ntBASIC0.24□□□□□ -2.37
HDDC3Q8N4P3 MIR6086-201ENST00000638065 55 ntBASIC0.24□□□□□ -2.37
HDDC3Q8N4P3 Y_RNA.813-201ENST00000364639 102 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 MIR518F-201ENST00000384973 87 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-1319P-201ENST00000390855 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-747P-201ENST00000390928 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-241P-201ENST00000391148 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNA5SP299-201ENST00000391203 116 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 MIR1257-201ENST00000408490 117 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-447P-201ENST00000410293 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-1118P-201ENST00000410382 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-1076P-201ENST00000410397 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-355P-201ENST00000410427 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-791P-201ENST00000410467 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-705P-201ENST00000410601 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-1100P-201ENST00000410691 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-860P-201ENST00000410860 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 SNORA40.8-201ENST00000411034 126 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-1217P-201ENST00000411276 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-785P-201ENST00000411324 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 BTF3P11-201ENST00000426582 477 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 MIR18B-201ENST00000454574 71 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-976P-201ENST00000516086 111 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 RNU6-191P-201ENST00000516295 94 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 AC022523.2-201ENST00000561045 150 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 UBE2V2P2-201ENST00000587677 504 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 SNORD58B-201ENST00000607313 66 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 U6.90-201ENST00000614007 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 U6.70-201ENST00000620287 104 ntBASIC0.23□□□□□ -2.37
HDDC3Q8N4P3 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.22□□□□□ -2.37
HDDC3Q8N4P3 RNU6-349P-201ENST00000362402 107 ntBASIC0.22□□□□□ -2.37
HDDC3Q8N4P3 Y_RNA.70-201ENST00000362886 110 ntBASIC0.22□□□□□ -2.37
HDDC3Q8N4P3 MIR518A1-201ENST00000385068 85 ntBASIC0.22□□□□□ -2.37
HDDC3Q8N4P3 MTCO1P5-201ENST00000433573 344 ntBASIC0.22□□□□□ -2.37
HDDC3Q8N4P3 AC087499.4-201ENST00000448505 178 ntBASIC0.22□□□□□ -2.37
HDDC3Q8N4P3 SNORD19B-201ENST00000459623 84 ntBASIC0.22□□□□□ -2.37
HDDC3Q8N4P3 Y_RNA.666-201ENST00000516187 112 ntBASIC0.22□□□□□ -2.37
HDDC3Q8N4P3 RNU7-53P-201ENST00000516705 60 ntBASIC0.22□□□□□ -2.37
HDDC3Q8N4P3 AL049861.1-201ENST00000603130 150 ntBASIC0.22□□□□□ -2.37
HDDC3Q8N4P3 AP000942.4-201ENST00000604811 241 ntBASIC0.22□□□□□ -2.37
HDDC3Q8N4P3 MIR6740-201ENST00000618268 113 ntBASIC0.22□□□□□ -2.37
HDDC3Q8N4P3 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.22□□□□□ -2.37
HDDC3Q8N4P3 MIR103A1-201ENST00000362165 78 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 MIR367-201ENST00000362299 68 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 Y_RNA.80-201ENST00000362996 102 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 SNORD115-28-201ENST00000363931 81 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 RNA5SP517-201ENST00000364724 117 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 Y_RNA.485-201ENST00000384395 102 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 Y_RNA.494-201ENST00000384432 111 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 RNA5SP496-201ENST00000391240 109 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 SNORD100-201ENST00000408573 76 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 RNU7-73P-201ENST00000458743 63 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 AC040926.1-201ENST00000530195 238 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 uc_338.6-201ENST00000613544 171 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 MIR6718-201ENST00000616153 80 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 AC067863.3-201ENST00000624172 122 ntBASIC0.21□□□□□ -2.38
HDDC3Q8N4P3 MIR588-201ENST00000384900 83 ntBASIC0.2□□□□□ -2.38
HDDC3Q8N4P3 RNU6-763P-201ENST00000390865 106 ntBASIC0.2□□□□□ -2.38
HDDC3Q8N4P3 SNRPGP12-201ENST00000449481 213 ntBASIC0.2□□□□□ -2.38
HDDC3Q8N4P3 RNU7-102P-201ENST00000458948 62 ntBASIC0.2□□□□□ -2.38
HDDC3Q8N4P3 AC108740.1-201ENST00000498629 225 ntBASIC0.2□□□□□ -2.38
HDDC3Q8N4P3 AC090897.1-201ENST00000580909 226 ntBASIC0.2□□□□□ -2.38
HDDC3Q8N4P3 MIR4305-201ENST00000583252 102 ntBASIC0.2□□□□□ -2.38
HDDC3Q8N4P3 SNORD113-8-201ENST00000363497 74 ntBASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 SNORA1.1-201ENST00000364671 133 ntBASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 RNU6-1138P-201ENST00000365359 106 ntBASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 Y_RNA.418-201ENST00000384029 102 ntBASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 MIR125B2-201ENST00000385128 89 ntBASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 SNORA40.5-201ENST00000391061 128 ntBASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 RNU6-1165P-201ENST00000410119 107 ntBASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 RNU6-383P-201ENST00000410864 94 ntBASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 RNA5SP94-201ENST00000516917 108 ntBASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 RNU7-156P-201ENST00000517214 74 ntBASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 MIR4662B-201ENST00000579498 81 ntBASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 AC006157.1-201ENST00000611750 366 ntBASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 MIR6759-201ENST00000638110 65 ntBASIC0.19□□□□□ -2.38
HDDC3Q8N4P3 SNORD44.1-201ENST00000363202 61 ntBASIC0.18□□□□□ -2.38
HDDC3Q8N4P3 RNA5SP117-201ENST00000365294 118 ntBASIC0.18□□□□□ -2.38
HDDC3Q8N4P3 Y_RNA.505-201ENST00000384489 102 ntBASIC0.18□□□□□ -2.38
HDDC3Q8N4P3 RNU6-913P-201ENST00000390913 95 ntBASIC0.18□□□□□ -2.38
HDDC3Q8N4P3 Y_RNA.602-201ENST00000410535 92 ntBASIC0.18□□□□□ -2.38
HDDC3Q8N4P3 RNU7-185P-201ENST00000459215 60 ntBASIC0.18□□□□□ -2.38
HDDC3Q8N4P3 RNU6-764P-201ENST00000516396 105 ntBASIC0.18□□□□□ -2.38
HDDC3Q8N4P3 SNORA25.18-201ENST00000607153 114 ntBASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 137.8 ms