Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.14□□□□□ -2.39
FOXA1P55317 AC008608.1-201ENST00000603910 127 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-40-201ENST00000606510 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD113-5-201ENST00000607261 78 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 PART1_1.1-201ENST00000611761 217 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 AC099654.14-201ENST00000638599 341 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 Y_RNA.5-201ENST00000362334 102 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 SNORD44.1-201ENST00000363202 61 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 RNU6-1205P-201ENST00000363625 106 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.13□□□□□ -2.39
FOXA1P55317 Y_RNA.418-201ENST00000384029 102 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 SNORD38B-201ENST00000384690 67 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 RNU6-763P-201ENST00000390865 106 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 RNU6-913P-201ENST00000390913 95 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 SNORD100-201ENST00000408573 76 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 RNU6-383P-201ENST00000410864 94 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 SNORA40.8-201ENST00000411034 126 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 SNRPGP12-201ENST00000449481 213 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 RNU7-102P-201ENST00000458948 62 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 RNA5SP94-201ENST00000516917 108 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 AC007751.1-201ENST00000529260 376 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.13□□□□□ -2.39
FOXA1P55317 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 AC090897.1-201ENST00000580909 226 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 AP000942.4-201ENST00000604811 241 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 AL021707.8-201ENST00000609428 183 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 SNORD38B-202ENST00000625943 69 ntBASIC0.13□□□□□ -2.39
FOXA1P55317 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.13□□□□□ -2.39
FOXA1P55317 SNORD115-28-201ENST00000363931 81 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 Y_RNA.222-201ENST00000364264 102 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 Y_RNA.390-201ENST00000383932 102 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 RNU6-144P-201ENST00000383951 107 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 Y_RNA.412-201ENST00000384001 104 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 RNU6-364P-201ENST00000384387 107 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 Y_RNA.526-201ENST00000384572 110 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 MIR518F-201ENST00000384973 87 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 MIR125B2-201ENST00000385128 89 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 RNA5SP299-201ENST00000391203 116 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 HMGN1P33-201ENST00000432945 451 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 MIR18B-201ENST00000454574 71 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 RNU7-73P-201ENST00000458743 63 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 SNORD19B-201ENST00000459623 84 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 RNU6-764P-201ENST00000516396 105 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.12□□□□□ -2.39
FOXA1P55317 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.12□□□□□ -2.39
FOXA1P55317 AC022523.2-201ENST00000561045 150 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 AL049861.1-201ENST00000603130 150 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 MIR8055-201ENST00000610739 97 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 uc_338.16-201ENST00000621804 95 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 AC067863.3-201ENST00000624172 122 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 Z97988.1-201ENST00000637697 135 ntBASIC0.12□□□□□ -2.39
FOXA1P55317 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.11□□□□□ -2.39
FOXA1P55317 RNA5SP62-201ENST00000363457 110 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 Y_RNA.280-201ENST00000364765 112 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-1138P-201ENST00000365359 106 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 Y_RNA.476-201ENST00000384347 108 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 Y_RNA.505-201ENST00000384489 102 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 MIR588-201ENST00000384900 83 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-1319P-201ENST00000390855 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-747P-201ENST00000390928 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 SNORA40.5-201ENST00000391061 128 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-241P-201ENST00000391148 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-1165P-201ENST00000410119 107 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-447P-201ENST00000410293 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-1118P-201ENST00000410382 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-1076P-201ENST00000410397 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-355P-201ENST00000410427 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-791P-201ENST00000410467 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-705P-201ENST00000410601 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-1100P-201ENST00000410691 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-860P-201ENST00000410860 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-1217P-201ENST00000411276 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-938P-201ENST00000411285 103 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-785P-201ENST00000411324 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RBMX2P4-201ENST00000441256 376 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 AC087499.4-201ENST00000448505 178 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU7-185P-201ENST00000459215 60 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 MRPS35P2-201ENST00000508242 191 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-976P-201ENST00000516086 111 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 RNU6-1046P-201ENST00000516538 107 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 AC040926.1-201ENST00000530195 238 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 MIR4431-201ENST00000579990 94 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 UBE2V2P2-201ENST00000587677 504 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 SNORA25.18-201ENST00000607153 114 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 U6.90-201ENST00000614007 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 U6.70-201ENST00000620287 104 ntBASIC0.11□□□□□ -2.39
FOXA1P55317 Y_RNA.70-201ENST00000362886 110 ntBASIC0.1□□□□□ -2.39
FOXA1P55317 SNORD113-8-201ENST00000363497 74 ntBASIC0.1□□□□□ -2.39
FOXA1P55317 RNU6-102P-201ENST00000384485 104 ntBASIC0.1□□□□□ -2.39
FOXA1P55317 MIR1257-201ENST00000408490 117 ntBASIC0.1□□□□□ -2.39
FOXA1P55317 MTCO1P5-201ENST00000433573 344 ntBASIC0.1□□□□□ -2.39
FOXA1P55317 RNU7-156P-201ENST00000517214 74 ntBASIC0.1□□□□□ -2.39
FOXA1P55317 MIR5190-201ENST00000581537 80 ntBASIC0.1□□□□□ -2.39
FOXA1P55317 SNORD92-201ENST00000585078 85 ntBASIC0.1□□□□□ -2.39
FOXA1P55317 C8orf59P2-201ENST00000603441 271 ntBASIC0.1□□□□□ -2.39
FOXA1P55317 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.1□□□□□ -2.39
FOXA1P55317 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.1□□□□□ -2.39
FOXA1P55317 Y_RNA.14-201ENST00000362415 103 ntBASIC0.09□□□□□ -2.4
FOXA1P55317 Y_RNA.37-201ENST00000362606 108 ntBASIC0.09□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 166.1 ms