Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNU7-73P-201ENST00000458743 63 ntBASIC0.29□□□□□ -2.36
RFX3P48380 RNU7-62P-201ENST00000458856 62 ntBASIC0.29□□□□□ -2.36
RFX3P48380 RNU7-67P-201ENST00000459003 62 ntBASIC0.29□□□□□ -2.36
RFX3P48380 SNORA62.5-201ENST00000516634 120 ntBASIC0.29□□□□□ -2.36
RFX3P48380 MIR3612-201ENST00000579753 87 ntBASIC0.29□□□□□ -2.36
RFX3P48380 LARP7P1-201ENST00000605576 316 ntBASIC0.29□□□□□ -2.36
RFX3P48380 MIR376A1-201ENST00000616574 68 ntBASIC0.29□□□□□ -2.36
RFX3P48380 AC013791.1-201ENST00000616619 62 ntBASIC0.29□□□□□ -2.36
RFX3P48380 SNORD38B-202ENST00000625943 69 ntBASIC0.29□□□□□ -2.36
RFX3P48380 Y_RNA.183-201ENST00000363882 113 ntBASIC0.28□□□□□ -2.36
RFX3P48380 Y_RNA.241-201ENST00000364470 117 ntBASIC0.28□□□□□ -2.36
RFX3P48380 Y_RNA.356-201ENST00000365475 113 ntBASIC0.28□□□□□ -2.36
RFX3P48380 Y_RNA.569-201ENST00000384749 103 ntBASIC0.28□□□□□ -2.36
RFX3P48380 SNORA40.5-201ENST00000391061 128 ntBASIC0.28□□□□□ -2.36
RFX3P48380 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.28□□□□□ -2.36
RFX3P48380 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.28□□□□□ -2.36
RFX3P48380 RNU7-56P-201ENST00000458744 62 ntBASIC0.28□□□□□ -2.36
RFX3P48380 AC082651.2-201ENST00000496833 166 ntBASIC0.28□□□□□ -2.36
RFX3P48380 RNA5SP134-201ENST00000516492 96 ntBASIC0.28□□□□□ -2.36
RFX3P48380 MIR4676-201ENST00000583078 72 ntBASIC0.28□□□□□ -2.36
RFX3P48380 AP000942.4-201ENST00000604811 241 ntBASIC0.28□□□□□ -2.36
RFX3P48380 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.27□□□□□ -2.37
RFX3P48380 SNORD115-28-201ENST00000363931 81 ntBASIC0.27□□□□□ -2.37
RFX3P48380 SNORD115-46-201ENST00000390982 71 ntBASIC0.27□□□□□ -2.37
RFX3P48380 MIR938-201ENST00000401216 83 ntBASIC0.27□□□□□ -2.37
RFX3P48380 MTND5P20-201ENST00000448677 143 ntBASIC0.27□□□□□ -2.37
RFX3P48380 RNU7-53P-201ENST00000516705 60 ntBASIC0.27□□□□□ -2.37
RFX3P48380 RNA5SP330-201ENST00000517096 96 ntBASIC0.27□□□□□ -2.37
RFX3P48380 MIR5688-201ENST00000580619 83 ntBASIC0.27□□□□□ -2.37
RFX3P48380 AC090574.1-201ENST00000623186 233 ntBASIC0.27□□□□□ -2.37
RFX3P48380 MIR367-201ENST00000362299 68 ntBASIC0.26□□□□□ -2.37
RFX3P48380 Y_RNA.85-201ENST00000363014 111 ntBASIC0.26□□□□□ -2.37
RFX3P48380 Y_RNA.395-201ENST00000383945 109 ntBASIC0.26□□□□□ -2.37
RFX3P48380 Y_RNA.579-201ENST00000390939 94 ntBASIC0.26□□□□□ -2.37
RFX3P48380 HSPE1P25-201ENST00000455484 251 ntBASIC0.26□□□□□ -2.37
RFX3P48380 SNORD77.4-201ENST00000516158 81 ntBASIC0.26□□□□□ -2.37
RFX3P48380 SNORA18.4-201ENST00000516440 124 ntBASIC0.26□□□□□ -2.37
RFX3P48380 RNU6-1046P-201ENST00000516538 107 ntBASIC0.26□□□□□ -2.37
RFX3P48380 MIR5692C2-201ENST00000577959 77 ntBASIC0.26□□□□□ -2.37
RFX3P48380 MIR4724-201ENST00000579485 89 ntBASIC0.26□□□□□ -2.37
RFX3P48380 AC023932.2-201ENST00000603176 175 ntBASIC0.26□□□□□ -2.37
RFX3P48380 AL162730.1-201ENST00000605734 292 ntBASIC0.26□□□□□ -2.37
RFX3P48380 MIR8055-201ENST00000610739 97 ntBASIC0.26□□□□□ -2.37
RFX3P48380 Z97988.1-201ENST00000637697 135 ntBASIC0.26□□□□□ -2.37
RFX3P48380 Y_RNA.258-201ENST00000364613 105 ntBASIC0.25□□□□□ -2.37
RFX3P48380 Y_RNA.813-201ENST00000364639 102 ntBASIC0.25□□□□□ -2.37
RFX3P48380 RNU6-1327P-201ENST00000365302 105 ntBASIC0.25□□□□□ -2.37
RFX3P48380 Y_RNA.587-201ENST00000391210 103 ntBASIC0.25□□□□□ -2.37
RFX3P48380 RNA5SP127-201ENST00000411051 133 ntBASIC0.25□□□□□ -2.37
RFX3P48380 AC090844.1-201ENST00000422019 156 ntBASIC0.25□□□□□ -2.37
RFX3P48380 MTCO1P5-201ENST00000433573 344 ntBASIC0.25□□□□□ -2.37
RFX3P48380 Y_RNA.637-201ENST00000459424 114 ntBASIC0.25□□□□□ -2.37
RFX3P48380 AC091959.1-201ENST00000495857 238 ntBASIC0.25□□□□□ -2.37
RFX3P48380 MRPS35P2-201ENST00000508242 191 ntBASIC0.25□□□□□ -2.37
RFX3P48380 MTND3P22-201ENST00000510932 243 ntBASIC0.25□□□□□ -2.37
RFX3P48380 Y_RNA.666-201ENST00000516187 112 ntBASIC0.25□□□□□ -2.37
RFX3P48380 RNU6-958P-201ENST00000516995 106 ntBASIC0.25□□□□□ -2.37
RFX3P48380 Y_RNA.715-201ENST00000517082 110 ntBASIC0.25□□□□□ -2.37
RFX3P48380 AL049861.1-201ENST00000603130 150 ntBASIC0.25□□□□□ -2.37
RFX3P48380 AC124312.5-201ENST00000604451 268 ntBASIC0.25□□□□□ -2.37
RFX3P48380 AC020891.4-201ENST00000605745 93 ntBASIC0.25□□□□□ -2.37
RFX3P48380 AC092634.7-201ENST00000621022 103 ntBASIC0.25□□□□□ -2.37
RFX3P48380 uc_338.22-201ENST00000622722 187 ntBASIC0.25□□□□□ -2.37
RFX3P48380 Y_RNA.115-201ENST00000363272 98 ntBASIC0.24□□□□□ -2.37
RFX3P48380 Y_RNA.303-201ENST00000364998 94 ntBASIC0.24□□□□□ -2.37
RFX3P48380 SNORD24-201ENST00000383884 75 ntBASIC0.24□□□□□ -2.37
RFX3P48380 MT-TD-201ENST00000387419 68 ntBASIC0.24□□□□□ -2.37
RFX3P48380 Y_RNA.581-201ENST00000391017 97 ntBASIC0.24□□□□□ -2.37
RFX3P48380 SNORD100-201ENST00000408573 76 ntBASIC0.24□□□□□ -2.37
RFX3P48380 Y_RNA.602-201ENST00000410535 92 ntBASIC0.24□□□□□ -2.37
RFX3P48380 RNU6-383P-201ENST00000410864 94 ntBASIC0.24□□□□□ -2.37
RFX3P48380 Y_RNA.702-201ENST00000516843 96 ntBASIC0.24□□□□□ -2.37
RFX3P48380 AC007485.1-201ENST00000616755 206 ntBASIC0.24□□□□□ -2.37
RFX3P48380 AC090971.5-201ENST00000621102 293 ntBASIC0.24□□□□□ -2.37
RFX3P48380 RNU6-1272P-201ENST00000362776 107 ntBASIC0.23□□□□□ -2.37
RFX3P48380 Y_RNA.58-201ENST00000362807 102 ntBASIC0.23□□□□□ -2.37
RFX3P48380 Y_RNA.154-201ENST00000363624 102 ntBASIC0.23□□□□□ -2.37
RFX3P48380 RNY3P1-201ENST00000365085 102 ntBASIC0.23□□□□□ -2.37
RFX3P48380 SNORA27-201ENST00000384323 126 ntBASIC0.23□□□□□ -2.37
RFX3P48380 Y_RNA.494-201ENST00000384432 111 ntBASIC0.23□□□□□ -2.37
RFX3P48380 MIR526A2-201ENST00000390198 65 ntBASIC0.23□□□□□ -2.37
RFX3P48380 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.23□□□□□ -2.37
RFX3P48380 AL358176.2-201ENST00000425769 204 ntBASIC0.23□□□□□ -2.37
RFX3P48380 BTF3P11-201ENST00000426582 477 ntBASIC0.23□□□□□ -2.37
RFX3P48380 MTND4P19-201ENST00000446659 478 ntBASIC0.23□□□□□ -2.37
RFX3P48380 RPS29P24-201ENST00000486345 171 ntBASIC0.23□□□□□ -2.37
RFX3P48380 AC108740.1-201ENST00000498629 225 ntBASIC0.23□□□□□ -2.37
RFX3P48380 AC007751.1-201ENST00000529260 376 ntBASIC0.23□□□□□ -2.37
RFX3P48380 AC090897.1-201ENST00000580909 226 ntBASIC0.23□□□□□ -2.37
RFX3P48380 AL133255.1-201ENST00000606374 441 ntBASIC0.23□□□□□ -2.37
RFX3P48380 AC037487.3-201ENST00000606668 112 ntBASIC0.23□□□□□ -2.37
RFX3P48380 uc_338.6-201ENST00000613544 171 ntBASIC0.23□□□□□ -2.37
RFX3P48380 uc_338.16-201ENST00000621804 95 ntBASIC0.23□□□□□ -2.37
RFX3P48380 AC112487.2-201ENST00000637950 304 ntBASIC0.23□□□□□ -2.37
RFX3P48380 Y_RNA.37-201ENST00000362606 108 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-290P-201ENST00000365212 101 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-326P-201ENST00000365480 107 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RNU6-716P-201ENST00000365621 103 ntBASIC0.22□□□□□ -2.37
RFX3P48380 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.22□□□□□ -2.37
RFX3P48380 Y_RNA.431-201ENST00000384086 102 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms