Protein–RNA interactions for Protein: P27694

RPA1, Replication protein A 70 kDa DNA-binding subunit, humanhuman

Predictions only

Length 616 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1P27694 SNORD77.4-201ENST00000516158 81 ntBASIC0.84□□□□□ -2.27
RPA1P27694 Y_RNA.777-201ENST00000516982 102 ntBASIC0.84□□□□□ -2.27
RPA1P27694 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.84□□□□□ -2.27
RPA1P27694 MIR4724-201ENST00000579485 89 ntBASIC0.84□□□□□ -2.27
RPA1P27694 Y_RNA.771-201ENST00000598668 102 ntBASIC0.84□□□□□ -2.27
RPA1P27694 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.84□□□□□ -2.27
RPA1P27694 Y_RNA.789-201ENST00000622480 102 ntBASIC0.84□□□□□ -2.27
RPA1P27694 MIR376A2-201ENST00000636782 80 ntBASIC0.84□□□□□ -2.27
RPA1P27694 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
RPA1P27694 MIR367-201ENST00000362299 68 ntBASIC0.83□□□□□ -2.28
RPA1P27694 Y_RNA.193-201ENST00000363979 102 ntBASIC0.83□□□□□ -2.28
RPA1P27694 Y_RNA.269-201ENST00000364685 89 ntBASIC0.83□□□□□ -2.28
RPA1P27694 RNU6-144P-201ENST00000383951 107 ntBASIC0.83□□□□□ -2.28
RPA1P27694 RNU6-442P-201ENST00000383968 104 ntBASIC0.83□□□□□ -2.28
RPA1P27694 SNORD61-201ENST00000384252 73 ntBASIC0.83□□□□□ -2.28
RPA1P27694 Y_RNA.562-201ENST00000384695 113 ntBASIC0.83□□□□□ -2.28
RPA1P27694 MIR518F-201ENST00000384973 87 ntBASIC0.83□□□□□ -2.28
RPA1P27694 MIR146A-201ENST00000385201 99 ntBASIC0.83□□□□□ -2.28
RPA1P27694 MIR526A2-201ENST00000390198 65 ntBASIC0.83□□□□□ -2.28
RPA1P27694 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.83□□□□□ -2.28
RPA1P27694 SNRPGP8-201ENST00000454064 226 ntBASIC0.83□□□□□ -2.28
RPA1P27694 RNU6-1132P-201ENST00000459214 107 ntBASIC0.83□□□□□ -2.28
RPA1P27694 MIR548AO-201ENST00000579992 96 ntBASIC0.83□□□□□ -2.28
RPA1P27694 MIR3128-201ENST00000581957 66 ntBASIC0.83□□□□□ -2.28
RPA1P27694 AC013244.2-201ENST00000603396 103 ntBASIC0.83□□□□□ -2.28
RPA1P27694 Y_RNA.802-201ENST00000614892 130 ntBASIC0.83□□□□□ -2.28
RPA1P27694 MIR6866-201ENST00000638146 69 ntBASIC0.83□□□□□ -2.28
RPA1P27694 HSBP1P2-201ENST00000299671 229 ntBASIC0.82□□□□□ -2.28
RPA1P27694 Y_RNA.66-201ENST00000362862 102 ntBASIC0.82□□□□□ -2.28
RPA1P27694 RNA5SP264-201ENST00000363115 107 ntBASIC0.82□□□□□ -2.28
RPA1P27694 SNORD27-201ENST00000363981 72 ntBASIC0.82□□□□□ -2.28
RPA1P27694 RNU6-484P-201ENST00000384016 107 ntBASIC0.82□□□□□ -2.28
RPA1P27694 MIR548O-201ENST00000408583 114 ntBASIC0.82□□□□□ -2.28
RPA1P27694 RPS3AP1-201ENST00000413190 320 ntBASIC0.82□□□□□ -2.28
RPA1P27694 MTND3P2-201ENST00000438452 342 ntBASIC0.82□□□□□ -2.28
RPA1P27694 AL392103.1-201ENST00000447000 198 ntBASIC0.82□□□□□ -2.28
RPA1P27694 RPS29P1-201ENST00000465274 159 ntBASIC0.82□□□□□ -2.28
RPA1P27694 RNU6-1045P-201ENST00000516321 107 ntBASIC0.82□□□□□ -2.28
RPA1P27694 RNA5SP255-201ENST00000516370 107 ntBASIC0.82□□□□□ -2.28
RPA1P27694 RNU6-197P-201ENST00000516680 100 ntBASIC0.82□□□□□ -2.28
RPA1P27694 CYP3A137P-201ENST00000562436 69 ntBASIC0.82□□□□□ -2.28
RPA1P27694 AC006006.1-201ENST00000603082 144 ntBASIC0.82□□□□□ -2.28
RPA1P27694 AC037487.3-201ENST00000606668 112 ntBASIC0.82□□□□□ -2.28
RPA1P27694 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.82□□□□□ -2.28
RPA1P27694 Y_RNA.60-201ENST00000362831 98 ntBASIC0.81□□□□□ -2.28
RPA1P27694 Y_RNA.238-201ENST00000364441 102 ntBASIC0.81□□□□□ -2.28
RPA1P27694 Y_RNA.590-201ENST00000410140 107 ntBASIC0.81□□□□□ -2.28
RPA1P27694 HMGN2P32-201ENST00000444648 269 ntBASIC0.81□□□□□ -2.28
RPA1P27694 RNU2-13P-201ENST00000515909 113 ntBASIC0.81□□□□□ -2.28
RPA1P27694 RNU6-830P-201ENST00000516353 107 ntBASIC0.81□□□□□ -2.28
RPA1P27694 SNORD36C-201ENST00000516733 66 ntBASIC0.81□□□□□ -2.28
RPA1P27694 RNU6-1270P-201ENST00000517128 108 ntBASIC0.81□□□□□ -2.28
RPA1P27694 AC023827.1-201ENST00000569247 97 ntBASIC0.81□□□□□ -2.28
RPA1P27694 MIR2681-201ENST00000581814 105 ntBASIC0.81□□□□□ -2.28
RPA1P27694 AC008133.2-201ENST00000624540 351 ntBASIC0.81□□□□□ -2.28
RPA1P27694 Y_RNA.23-201ENST00000362496 106 ntBASIC0.8□□□□□ -2.28
RPA1P27694 Y_RNA.65-201ENST00000362846 100 ntBASIC0.8□□□□□ -2.28
RPA1P27694 Y_RNA.149-201ENST00000363558 117 ntBASIC0.8□□□□□ -2.28
RPA1P27694 Y_RNA.292-201ENST00000364904 97 ntBASIC0.8□□□□□ -2.28
RPA1P27694 RNU6-1138P-201ENST00000365359 106 ntBASIC0.8□□□□□ -2.28
RPA1P27694 RNU6-1335P-201ENST00000365426 107 ntBASIC0.8□□□□□ -2.28
RPA1P27694 SNORA1-201ENST00000384107 130 ntBASIC0.8□□□□□ -2.28
RPA1P27694 RNU6-381P-201ENST00000391259 108 ntBASIC0.8□□□□□ -2.28
RPA1P27694 AL606845.1-201ENST00000404881 255 ntBASIC0.8□□□□□ -2.28
RPA1P27694 AF228730.3-201ENST00000436691 102 ntBASIC0.8□□□□□ -2.28
RPA1P27694 MTND4LP30-201ENST00000454092 297 ntBASIC0.8□□□□□ -2.28
RPA1P27694 snoU13.21-201ENST00000459368 105 ntBASIC0.8□□□□□ -2.28
RPA1P27694 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.8□□□□□ -2.28
RPA1P27694 PSMC1P5-201ENST00000512850 177 ntBASIC0.8□□□□□ -2.28
RPA1P27694 MIR4308-201ENST00000580634 81 ntBASIC0.8□□□□□ -2.28
RPA1P27694 MIR4791-201ENST00000607666 84 ntBASIC0.8□□□□□ -2.28
RPA1P27694 uc_338.6-201ENST00000613544 171 ntBASIC0.8□□□□□ -2.28
RPA1P27694 MIR6516-201ENST00000630554 81 ntBASIC0.8□□□□□ -2.28
RPA1P27694 MTND1P7-201ENST00000632801 297 ntBASIC0.8□□□□□ -2.28
RPA1P27694 Y_RNA.226-201ENST00000364337 114 ntBASIC0.79□□□□□ -2.28
RPA1P27694 RNU6-923P-201ENST00000364753 107 ntBASIC0.79□□□□□ -2.28
RPA1P27694 Y_RNA.304-201ENST00000365011 112 ntBASIC0.79□□□□□ -2.28
RPA1P27694 Y_RNA.307-201ENST00000365022 117 ntBASIC0.79□□□□□ -2.28
RPA1P27694 Y_RNA.308-201ENST00000365043 101 ntBASIC0.79□□□□□ -2.28
RPA1P27694 Y_RNA.330-201ENST00000365230 109 ntBASIC0.79□□□□□ -2.28
RPA1P27694 SNORA8.3-201ENST00000384679 139 ntBASIC0.79□□□□□ -2.28
RPA1P27694 RNA5SP496-201ENST00000391240 109 ntBASIC0.79□□□□□ -2.28
RPA1P27694 RNU6-493P-201ENST00000391321 108 ntBASIC0.79□□□□□ -2.28
RPA1P27694 AC006461.1-201ENST00000412637 326 ntBASIC0.79□□□□□ -2.28
RPA1P27694 Y_RNA.714-201ENST00000517065 90 ntBASIC0.79□□□□□ -2.28
RPA1P27694 MIR4719-201ENST00000585233 84 ntBASIC0.79□□□□□ -2.28
RPA1P27694 AL442067.1-201ENST00000613261 223 ntBASIC0.79□□□□□ -2.28
RPA1P27694 MIR6835-201ENST00000621552 64 ntBASIC0.79□□□□□ -2.28
RPA1P27694 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.79□□□□□ -2.28
RPA1P27694 MIR4251-201ENST00000635819 61 ntBASIC0.79□□□□□ -2.28
RPA1P27694 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.79□□□□□ -2.28
RPA1P27694 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
RPA1P27694 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
RPA1P27694 MIR103A2-201ENST00000362154 78 ntBASIC0.78□□□□□ -2.28
RPA1P27694 SNORD45.3-201ENST00000363836 72 ntBASIC0.78□□□□□ -2.28
RPA1P27694 RNY4P28-201ENST00000365281 93 ntBASIC0.78□□□□□ -2.28
RPA1P27694 Y_RNA.352-201ENST00000365439 102 ntBASIC0.78□□□□□ -2.28
RPA1P27694 SNORD38C-201ENST00000384381 69 ntBASIC0.78□□□□□ -2.28
RPA1P27694 RNU6-110P-201ENST00000384508 104 ntBASIC0.78□□□□□ -2.28
RPA1P27694 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms