Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNU6-351P-201ENST00000516097 100 ntBASIC0.73□□□□□ -2.29
DDX28Q9NUL7 MIR2115-201ENST00000516657 100 ntBASIC0.73□□□□□ -2.29
DDX28Q9NUL7 MIR3973-201ENST00000579824 107 ntBASIC0.73□□□□□ -2.29
DDX28Q9NUL7 RN7SL793P-201ENST00000583259 296 ntBASIC0.73□□□□□ -2.29
DDX28Q9NUL7 uc_338.4-201ENST00000616635 176 ntBASIC0.73□□□□□ -2.29
DDX28Q9NUL7 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
DDX28Q9NUL7 SNORA25.1-201ENST00000362326 128 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.14-201ENST00000362415 103 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.19-201ENST00000362462 99 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 RNU6-1272P-201ENST00000362776 107 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 snoU2_19.2-201ENST00000363024 80 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.152-201ENST00000363578 100 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 RNU6-396P-201ENST00000365369 105 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.394-201ENST00000383942 103 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 RNU6-514P-201ENST00000384208 107 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 RNU6-613P-201ENST00000410412 108 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 RNU6-383P-201ENST00000410864 94 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 RNU6-847P-201ENST00000411115 108 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 AC067940.1-201ENST00000458411 300 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 AC098869.1-201ENST00000481627 292 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 RNU2-13P-201ENST00000515909 113 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 RNY3P15-201ENST00000516297 97 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 RNU6-1110P-201ENST00000516462 101 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 AC131281.1-201ENST00000522984 164 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 MIR4698-201ENST00000577795 80 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 AL353765.1-201ENST00000605514 183 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 MIR4791-201ENST00000607666 84 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 AL021707.8-201ENST00000609428 183 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.72□□□□□ -2.29
DDX28Q9NUL7 AL136317.1-201ENST00000612653 226 ntBASIC0.72□□□□□ -2.29
DDX28Q9NUL7 Y_RNA.138-201ENST00000363462 102 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 Y_RNA.205-201ENST00000364128 113 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 RNU6-654P-201ENST00000364373 107 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 RNU1-133P-201ENST00000364867 167 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 RNY1P4-201ENST00000384595 115 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 Y_RNA.541-201ENST00000384640 113 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 SNORD89-201ENST00000390981 114 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 MTCO2P12-201ENST00000427426 682 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 RNU7-149P-201ENST00000516739 59 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.71□□□□□ -2.3
DDX28Q9NUL7 MIR4724-201ENST00000579485 89 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 AC113195.1-201ENST00000579952 141 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 RNU6-94P-201ENST00000607728 107 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 AC108706.1-201ENST00000611053 297 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 MTND1P7-201ENST00000632801 297 ntBASIC0.71□□□□□ -2.3
DDX28Q9NUL7 MIR367-201ENST00000362299 68 ntBASIC0.7□□□□□ -2.3
DDX28Q9NUL7 RNU6-1138P-201ENST00000365359 106 ntBASIC0.7□□□□□ -2.3
DDX28Q9NUL7 Y_RNA.547-201ENST00000384654 119 ntBASIC0.7□□□□□ -2.3
DDX28Q9NUL7 MIR215-201ENST00000384858 110 ntBASIC0.7□□□□□ -2.3
DDX28Q9NUL7 RNU6-994P-201ENST00000410507 111 ntBASIC0.7□□□□□ -2.3
DDX28Q9NUL7 MTND5P15-201ENST00000434246 349 ntBASIC0.7□□□□□ -2.3
DDX28Q9NUL7 RNU6-1132P-201ENST00000459214 107 ntBASIC0.7□□□□□ -2.3
DDX28Q9NUL7 AC107297.1-201ENST00000459991 176 ntBASIC0.7□□□□□ -2.3
DDX28Q9NUL7 AC091959.1-201ENST00000495857 238 ntBASIC0.7□□□□□ -2.3
DDX28Q9NUL7 SNORA27.4-201ENST00000516650 95 ntBASIC0.7□□□□□ -2.3
DDX28Q9NUL7 MIR3171-201ENST00000584270 74 ntBASIC0.7□□□□□ -2.3
DDX28Q9NUL7 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.69□□□□□ -2.3
DDX28Q9NUL7 RNA5SP325-201ENST00000363756 130 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 Y_RNA.210-201ENST00000364161 110 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 Y_RNA.293-201ENST00000364908 93 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 Y_RNA.527-201ENST00000384573 102 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 SNORA2B-201ENST00000384583 137 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 MIR605-201ENST00000385078 83 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.69□□□□□ -2.3
DDX28Q9NUL7 RNA5SP436-201ENST00000516020 115 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.69□□□□□ -2.3
DDX28Q9NUL7 AC133485.1-201ENST00000567176 124 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 AC138907.6-201ENST00000568401 126 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 MIR548AO-201ENST00000579992 96 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 MIR5688-201ENST00000580619 83 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 AC012433.1-201ENST00000588916 398 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 AL049861.1-201ENST00000603130 150 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 AC243994.1-201ENST00000618627 109 ntBASIC0.69□□□□□ -2.3
DDX28Q9NUL7 Y_RNA.168-201ENST00000363740 102 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 Y_RNA.217-201ENST00000364214 105 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 RNU6-1335P-201ENST00000365426 107 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 RNU6-662P-201ENST00000384253 104 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 RNU6-110P-201ENST00000384508 104 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 MT-TN-201ENST00000387400 73 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 MIR548O-201ENST00000408583 114 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 RPL21P38-201ENST00000418090 167 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.68□□□□□ -2.3
DDX28Q9NUL7 BTF3P11-201ENST00000426582 477 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 AC004941.2-201ENST00000427009 228 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 Y_RNA.641-201ENST00000459414 105 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 RNU7-25P-201ENST00000516544 62 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 AP003733.2-201ENST00000529409 171 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 AC020661.2-201ENST00000560114 134 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 MIR4662B-201ENST00000579498 81 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 MIR4680-201ENST00000580906 66 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 AC104465.1-201ENST00000611365 139 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 7SK.10-201ENST00000621414 298 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 MIR6866-201ENST00000638146 69 ntBASIC0.68□□□□□ -2.3
DDX28Q9NUL7 Y_RNA.202-201ENST00000364083 110 ntBASIC0.67□□□□□ -2.3
DDX28Q9NUL7 RNU6-806P-201ENST00000365147 105 ntBASIC0.67□□□□□ -2.3
DDX28Q9NUL7 MIR526A2-201ENST00000390198 65 ntBASIC0.67□□□□□ -2.3
DDX28Q9NUL7 MTCO2P24-201ENST00000515611 426 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 181.8 ms