Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 Y_RNA.217-201ENST00000364214 105 ntBASIC0.63□□□□□ -2.31
LIM2P55344 Y_RNA.376-201ENST00000365638 108 ntBASIC0.63□□□□□ -2.31
LIM2P55344 SNORA24-201ENST00000384096 131 ntBASIC0.63□□□□□ -2.31
LIM2P55344 MIR508-201ENST00000384857 115 ntBASIC0.63□□□□□ -2.31
LIM2P55344 MIR100-201ENST00000385259 80 ntBASIC0.63□□□□□ -2.31
LIM2P55344 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
LIM2P55344 SNORD89-201ENST00000390981 114 ntBASIC0.63□□□□□ -2.31
LIM2P55344 MIR548J-201ENST00000408833 112 ntBASIC0.63□□□□□ -2.31
LIM2P55344 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.63□□□□□ -2.31
LIM2P55344 AC087499.4-201ENST00000448505 178 ntBASIC0.63□□□□□ -2.31
LIM2P55344 Y_RNA.641-201ENST00000459414 105 ntBASIC0.63□□□□□ -2.31
LIM2P55344 AC107297.1-201ENST00000459991 176 ntBASIC0.63□□□□□ -2.31
LIM2P55344 AC091959.1-201ENST00000495857 238 ntBASIC0.63□□□□□ -2.31
LIM2P55344 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.63□□□□□ -2.31
LIM2P55344 SNORD77.4-201ENST00000516158 81 ntBASIC0.63□□□□□ -2.31
LIM2P55344 RNU7-149P-201ENST00000516739 59 ntBASIC0.63□□□□□ -2.31
LIM2P55344 AC131281.1-201ENST00000522984 164 ntBASIC0.63□□□□□ -2.31
LIM2P55344 AC023827.1-201ENST00000569247 97 ntBASIC0.63□□□□□ -2.31
LIM2P55344 SNORA4-201ENST00000584302 138 ntBASIC0.63□□□□□ -2.31
LIM2P55344 AL590095.2-201ENST00000604136 117 ntBASIC0.63□□□□□ -2.31
LIM2P55344 MIR4791-201ENST00000607666 84 ntBASIC0.63□□□□□ -2.31
LIM2P55344 SNORD115-34-201ENST00000362441 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-12-201ENST00000362583 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-29-201ENST00000362834 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-9-201ENST00000362912 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-21-201ENST00000362963 81 ntBASIC0.62□□□□□ -2.31
LIM2P55344 snoU2_19.2-201ENST00000363024 80 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-14-201ENST00000363090 81 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-13-201ENST00000363358 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-41-201ENST00000363608 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-11-201ENST00000363616 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-5-201ENST00000363633 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-39-201ENST00000363694 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-4-201ENST00000363810 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-16-201ENST00000363887 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-6-201ENST00000363942 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 Y_RNA.202-201ENST00000364083 110 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-42-201ENST00000364273 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-15-201ENST00000364809 81 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-1-201ENST00000364961 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-26-201ENST00000365067 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-10-201ENST00000365073 81 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-43-201ENST00000365503 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-36-201ENST00000365629 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 ELOCP20-201ENST00000422460 345 ntBASIC0.62□□□□□ -2.31
LIM2P55344 MTCO2P12-201ENST00000427426 682 ntBASIC0.62□□□□□ -2.31
LIM2P55344 AL035398.1-201ENST00000430869 322 ntBASIC0.62□□□□□ -2.31
LIM2P55344 AC133485.1-201ENST00000567176 124 ntBASIC0.62□□□□□ -2.31
LIM2P55344 AC138907.6-201ENST00000568401 126 ntBASIC0.62□□□□□ -2.31
LIM2P55344 SNORD115-40-201ENST00000606510 82 ntBASIC0.62□□□□□ -2.31
LIM2P55344 MIR6734-201ENST00000621166 68 ntBASIC0.62□□□□□ -2.31
LIM2P55344 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.62□□□□□ -2.31
LIM2P55344 Y_RNA.19-201ENST00000362462 99 ntBASIC0.61□□□□□ -2.31
LIM2P55344 RNU6-580P-201ENST00000365159 107 ntBASIC0.61□□□□□ -2.31
LIM2P55344 Y_RNA.355-201ENST00000365462 98 ntBASIC0.61□□□□□ -2.31
LIM2P55344 Y_RNA.394-201ENST00000383942 103 ntBASIC0.61□□□□□ -2.31
LIM2P55344 Y_RNA.541-201ENST00000384640 113 ntBASIC0.61□□□□□ -2.31
LIM2P55344 Y_RNA.547-201ENST00000384654 119 ntBASIC0.61□□□□□ -2.31
LIM2P55344 MIR1827-201ENST00000408549 66 ntBASIC0.61□□□□□ -2.31
LIM2P55344 MIR548O-201ENST00000408583 114 ntBASIC0.61□□□□□ -2.31
LIM2P55344 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.61□□□□□ -2.31
LIM2P55344 AL731563.1-201ENST00000442202 214 ntBASIC0.61□□□□□ -2.31
LIM2P55344 snoU13.16-201ENST00000459350 104 ntBASIC0.61□□□□□ -2.31
LIM2P55344 AC098869.1-201ENST00000481627 292 ntBASIC0.61□□□□□ -2.31
LIM2P55344 RNU7-181P-201ENST00000517234 74 ntBASIC0.61□□□□□ -2.31
LIM2P55344 AC004812.1-201ENST00000540773 146 ntBASIC0.61□□□□□ -2.31
LIM2P55344 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.61□□□□□ -2.31
LIM2P55344 MIR4680-201ENST00000580906 66 ntBASIC0.61□□□□□ -2.31
LIM2P55344 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.61□□□□□ -2.31
LIM2P55344 AC104465.1-201ENST00000611365 139 ntBASIC0.61□□□□□ -2.31
LIM2P55344 AC243994.1-201ENST00000618627 109 ntBASIC0.61□□□□□ -2.31
LIM2P55344 AC068700.1-201ENST00000565862 3754 ntBASIC0.61□□□□□ -2.31
LIM2P55344 Y_RNA.138-201ENST00000363462 102 ntBASIC0.6□□□□□ -2.31
LIM2P55344 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
LIM2P55344 SNORD24-201ENST00000383884 75 ntBASIC0.6□□□□□ -2.31
LIM2P55344 RNU6-994P-201ENST00000410507 111 ntBASIC0.6□□□□□ -2.31
LIM2P55344 MTCO2P24-201ENST00000515611 426 ntBASIC0.6□□□□□ -2.31
LIM2P55344 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.6□□□□□ -2.31
LIM2P55344 AP003733.2-201ENST00000529409 171 ntBASIC0.6□□□□□ -2.31
LIM2P55344 MIR4714-201ENST00000580728 77 ntBASIC0.6□□□□□ -2.31
LIM2P55344 MIR4264-201ENST00000583520 66 ntBASIC0.6□□□□□ -2.31
LIM2P55344 MIR3171-201ENST00000584270 74 ntBASIC0.6□□□□□ -2.31
LIM2P55344 Y_RNA.802-201ENST00000614892 130 ntBASIC0.6□□□□□ -2.31
LIM2P55344 MTND1P7-201ENST00000632801 297 ntBASIC0.6□□□□□ -2.31
LIM2P55344 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.59□□□□□ -2.31
LIM2P55344 RNU6-797P-201ENST00000363101 109 ntBASIC0.59□□□□□ -2.31
LIM2P55344 MIR605-201ENST00000385078 83 ntBASIC0.59□□□□□ -2.31
LIM2P55344 Y_RNA.587-201ENST00000391210 103 ntBASIC0.59□□□□□ -2.31
LIM2P55344 BTF3P11-201ENST00000426582 477 ntBASIC0.59□□□□□ -2.31
LIM2P55344 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.59□□□□□ -2.31
LIM2P55344 SERF1AP1-201ENST00000514575 187 ntBASIC0.59□□□□□ -2.31
LIM2P55344 RNY3P15-201ENST00000516297 97 ntBASIC0.59□□□□□ -2.31
LIM2P55344 RNU7-25P-201ENST00000516544 62 ntBASIC0.59□□□□□ -2.31
LIM2P55344 AC020661.2-201ENST00000560114 134 ntBASIC0.59□□□□□ -2.31
LIM2P55344 MIR548AO-201ENST00000579992 96 ntBASIC0.59□□□□□ -2.31
LIM2P55344 AP000753.3-201ENST00000604083 169 ntBASIC0.59□□□□□ -2.31
LIM2P55344 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
LIM2P55344 Y_RNA.210-201ENST00000364161 110 ntBASIC0.58□□□□□ -2.32
LIM2P55344 RNU6-654P-201ENST00000364373 107 ntBASIC0.58□□□□□ -2.32
LIM2P55344 SNORA63C-201ENST00000364578 129 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 404 ms