Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 SNORD24-201ENST00000383884 75 ntBASIC1.92□□□□□ -2.1
PCDHA3Q9Y5H8 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
PCDHA3Q9Y5H8 RNU6-239P-201ENST00000390990 99 ntBASIC1.92□□□□□ -2.1
PCDHA3Q9Y5H8 MIR1267-201ENST00000408723 78 ntBASIC1.92□□□□□ -2.1
PCDHA3Q9Y5H8 RNU6-394P-201ENST00000410735 107 ntBASIC1.92□□□□□ -2.1
PCDHA3Q9Y5H8 RNU6-504P-201ENST00000516568 104 ntBASIC1.92□□□□□ -2.1
PCDHA3Q9Y5H8 RNU7-121P-201ENST00000516604 62 ntBASIC1.92□□□□□ -2.1
PCDHA3Q9Y5H8 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
PCDHA3Q9Y5H8 Y_RNA.66-201ENST00000362862 102 ntBASIC1.91□□□□□ -2.1
PCDHA3Q9Y5H8 Y_RNA.91-201ENST00000363042 107 ntBASIC1.91□□□□□ -2.1
PCDHA3Q9Y5H8 AC107027.2-201ENST00000512197 115 ntBASIC1.91□□□□□ -2.1
PCDHA3Q9Y5H8 RNU6-1212P-201ENST00000517023 104 ntBASIC1.91□□□□□ -2.1
PCDHA3Q9Y5H8 SNORA44.1-201ENST00000517031 108 ntBASIC1.91□□□□□ -2.1
PCDHA3Q9Y5H8 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.91□□□□□ -2.1
PCDHA3Q9Y5H8 MIR4419B-201ENST00000577260 68 ntBASIC1.91□□□□□ -2.1
PCDHA3Q9Y5H8 MIR378D2-201ENST00000580636 98 ntBASIC1.91□□□□□ -2.1
PCDHA3Q9Y5H8 MIR7843-201ENST00000622274 79 ntBASIC1.91□□□□□ -2.1
PCDHA3Q9Y5H8 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
PCDHA3Q9Y5H8 MIR452-201ENST00000385020 85 ntBASIC1.9□□□□□ -2.11
PCDHA3Q9Y5H8 Y_RNA.580-201ENST00000391004 95 ntBASIC1.9□□□□□ -2.11
PCDHA3Q9Y5H8 RNU6-830P-201ENST00000516353 107 ntBASIC1.9□□□□□ -2.11
PCDHA3Q9Y5H8 AC012493.3-201ENST00000604494 112 ntBASIC1.9□□□□□ -2.11
PCDHA3Q9Y5H8 RNU6-888P-201ENST00000363010 101 ntBASIC1.89□□□□□ -2.11
PCDHA3Q9Y5H8 Y_RNA.272-201ENST00000364696 102 ntBASIC1.89□□□□□ -2.11
PCDHA3Q9Y5H8 Y_RNA.337-201ENST00000365312 102 ntBASIC1.89□□□□□ -2.11
PCDHA3Q9Y5H8 MIR30A-201ENST00000385092 71 ntBASIC1.89□□□□□ -2.11
PCDHA3Q9Y5H8 AC006461.1-201ENST00000412637 326 ntBASIC1.89□□□□□ -2.11
PCDHA3Q9Y5H8 AC015922.2-201ENST00000435593 184 ntBASIC1.89□□□□□ -2.11
PCDHA3Q9Y5H8 SNRPGP13-201ENST00000442212 177 ntBASIC1.89□□□□□ -2.11
PCDHA3Q9Y5H8 AC093850.1-201ENST00000454121 251 ntBASIC1.89□□□□□ -2.11
PCDHA3Q9Y5H8 RPL23AP42-201ENST00000471152 471 ntBASIC1.89□□□□□ -2.11
PCDHA3Q9Y5H8 RPS29P11-201ENST00000496507 171 ntBASIC1.89□□□□□ -2.11
PCDHA3Q9Y5H8 Y_RNA.666-201ENST00000516187 112 ntBASIC1.89□□□□□ -2.11
PCDHA3Q9Y5H8 MIR4778-201ENST00000577635 80 ntBASIC1.89□□□□□ -2.11
PCDHA3Q9Y5H8 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
PCDHA3Q9Y5H8 RNU6-199P-201ENST00000362954 107 ntBASIC1.88□□□□□ -2.11
PCDHA3Q9Y5H8 SNORD38C-201ENST00000384381 69 ntBASIC1.88□□□□□ -2.11
PCDHA3Q9Y5H8 SNORD116-25-201ENST00000516517 92 ntBASIC1.88□□□□□ -2.11
PCDHA3Q9Y5H8 SUMO2P16-201ENST00000519475 264 ntBASIC1.88□□□□□ -2.11
PCDHA3Q9Y5H8 AC015688.6-201ENST00000577737 104 ntBASIC1.88□□□□□ -2.11
PCDHA3Q9Y5H8 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
PCDHA3Q9Y5H8 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.88□□□□□ -2.11
PCDHA3Q9Y5H8 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.87□□□□□ -2.11
PCDHA3Q9Y5H8 RNU6-978P-201ENST00000364371 103 ntBASIC1.87□□□□□ -2.11
PCDHA3Q9Y5H8 RNU6-597P-201ENST00000365620 102 ntBASIC1.87□□□□□ -2.11
PCDHA3Q9Y5H8 SNORD61-201ENST00000384252 73 ntBASIC1.87□□□□□ -2.11
PCDHA3Q9Y5H8 HMGN2P23-201ENST00000456759 269 ntBASIC1.87□□□□□ -2.11
PCDHA3Q9Y5H8 AC024614.2-201ENST00000577584 372 ntBASIC1.87□□□□□ -2.11
PCDHA3Q9Y5H8 MIR3144-201ENST00000579460 79 ntBASIC1.87□□□□□ -2.11
PCDHA3Q9Y5H8 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.87□□□□□ -2.11
PCDHA3Q9Y5H8 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
PCDHA3Q9Y5H8 RNU6-457P-201ENST00000363999 107 ntBASIC1.86□□□□□ -2.11
PCDHA3Q9Y5H8 MIR513A1-201ENST00000385138 129 ntBASIC1.86□□□□□ -2.11
PCDHA3Q9Y5H8 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
PCDHA3Q9Y5H8 AC019129.1-201ENST00000403786 261 ntBASIC1.86□□□□□ -2.11
PCDHA3Q9Y5H8 MIR1289-2-201ENST00000408360 111 ntBASIC1.86□□□□□ -2.11
PCDHA3Q9Y5H8 MIR548O-201ENST00000408583 114 ntBASIC1.86□□□□□ -2.11
PCDHA3Q9Y5H8 AC003989.2-201ENST00000440224 169 ntBASIC1.86□□□□□ -2.11
PCDHA3Q9Y5H8 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.86□□□□□ -2.11
PCDHA3Q9Y5H8 RNU6-693P-201ENST00000516134 107 ntBASIC1.86□□□□□ -2.11
PCDHA3Q9Y5H8 AC090142.3-201ENST00000519012 385 ntBASIC1.86□□□□□ -2.11
PCDHA3Q9Y5H8 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
PCDHA3Q9Y5H8 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.86□□□□□ -2.11
PCDHA3Q9Y5H8 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 RNU6-1062P-201ENST00000383908 107 ntBASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 Y_RNA.393-201ENST00000383936 102 ntBASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 MIR548A2-201ENST00000384956 97 ntBASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 MIR653-201ENST00000385279 96 ntBASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 AL445685.2-201ENST00000422551 342 ntBASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 snoU13.9-201ENST00000458927 103 ntBASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 DEFB122-202ENST00000569013 197 ntBASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 MIR3198-2-201ENST00000577868 80 ntBASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 MIR3646-201ENST00000578301 84 ntBASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 MIR3618-201ENST00000580330 88 ntBASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 AC104465.1-201ENST00000611365 139 ntBASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.85□□□□□ -2.11
PCDHA3Q9Y5H8 SNORA2.2-201ENST00000365473 135 ntBASIC1.84□□□□□ -2.11
PCDHA3Q9Y5H8 Y_RNA.521-201ENST00000384560 114 ntBASIC1.84□□□□□ -2.11
PCDHA3Q9Y5H8 Y_RNA.547-201ENST00000384654 119 ntBASIC1.84□□□□□ -2.11
PCDHA3Q9Y5H8 MIR526A1-201ENST00000384897 85 ntBASIC1.84□□□□□ -2.11
PCDHA3Q9Y5H8 MIR518F-201ENST00000384973 87 ntBASIC1.84□□□□□ -2.11
PCDHA3Q9Y5H8 MIR9-3-201ENST00000385084 90 ntBASIC1.84□□□□□ -2.11
PCDHA3Q9Y5H8 MIR136-201ENST00000385207 82 ntBASIC1.84□□□□□ -2.11
PCDHA3Q9Y5H8 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.84□□□□□ -2.11
PCDHA3Q9Y5H8 RNA5SP182-201ENST00000516064 82 ntBASIC1.84□□□□□ -2.11
PCDHA3Q9Y5H8 AC007751.1-201ENST00000529260 376 ntBASIC1.84□□□□□ -2.11
PCDHA3Q9Y5H8 MIR4524B-201ENST00000581569 115 ntBASIC1.84□□□□□ -2.11
PCDHA3Q9Y5H8 DNAJC19P2-201ENST00000593340 302 ntBASIC1.84□□□□□ -2.11
PCDHA3Q9Y5H8 AL365205.2-201ENST00000594586 68 ntBASIC1.84□□□□□ -2.11
PCDHA3Q9Y5H8 ICE2P2-201ENST00000483823 2787 ntBASIC1.83□□□□□ -2.12
PCDHA3Q9Y5H8 MIR302D-201ENST00000362275 68 ntBASIC1.83□□□□□ -2.12
PCDHA3Q9Y5H8 RNU6-804P-201ENST00000384286 107 ntBASIC1.83□□□□□ -2.12
PCDHA3Q9Y5H8 Y_RNA.542-201ENST00000384641 111 ntBASIC1.83□□□□□ -2.12
PCDHA3Q9Y5H8 RPL31P63-201ENST00000422565 375 ntBASIC1.83□□□□□ -2.12
PCDHA3Q9Y5H8 RNU7-25P-201ENST00000516544 62 ntBASIC1.83□□□□□ -2.12
PCDHA3Q9Y5H8 AC090049.2-201ENST00000550377 109 ntBASIC1.83□□□□□ -2.12
PCDHA3Q9Y5H8 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.83□□□□□ -2.12
PCDHA3Q9Y5H8 SNORA25.7-201ENST00000364375 127 ntBASIC1.82□□□□□ -2.12
PCDHA3Q9Y5H8 RNA5SP259-201ENST00000365541 109 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms