Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 SNORD114-27-201ENST00000363766 70 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 Y_RNA.183-201ENST00000363882 113 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 Y_RNA.214-201ENST00000364201 112 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 Y_RNA.216-201ENST00000364205 93 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 SNORD113.3-201ENST00000364630 78 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 Y_RNA.445-201ENST00000384168 102 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 SNORD38C-201ENST00000384381 69 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 Y_RNA.547-201ENST00000384654 119 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 Y_RNA.581-201ENST00000391017 97 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 MIR1827-201ENST00000408549 66 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 RNU6-938P-201ENST00000411285 103 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 FABP5P4-201ENST00000437203 171 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 U7.7-201ENST00000459276 60 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 7SK.10-201ENST00000621414 298 ntBASIC0.54□□□□□ -2.32
CCDC54Q8NEL0 SNORD18A-201ENST00000363753 72 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 RNU6-580P-201ENST00000365159 107 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 Y_RNA.424-201ENST00000384063 103 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 MIR92A1-201ENST00000385233 78 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 SNORD111-201ENST00000408139 94 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 MIR1252-201ENST00000408861 65 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 AC024067.1-201ENST00000426199 223 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 AC244023.1-201ENST00000426884 112 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 AC015818.7-201ENST00000428754 109 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 AC087499.7-201ENST00000441958 109 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 Y_RNA.713-201ENST00000517013 96 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 Y_RNA.714-201ENST00000517065 90 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 RNU6-1137P-201ENST00000517073 99 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 AC242498.1-201ENST00000604134 111 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 AC104465.1-201ENST00000611365 139 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 AC013791.1-201ENST00000616619 62 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 AC243994.1-201ENST00000618627 109 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 uc_338.17-201ENST00000619633 179 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 AC090971.5-201ENST00000621102 293 ntBASIC0.53□□□□□ -2.32
CCDC54Q8NEL0 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.16-201ENST00000362421 102 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.28-201ENST00000362554 111 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 RNU4-10P-201ENST00000364383 140 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.526-201ENST00000384572 110 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 SNORA2B-201ENST00000384583 137 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.537-201ENST00000384626 109 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.572-201ENST00000384757 98 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 MIR548A2-201ENST00000384956 97 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 MT-TD-201ENST00000387419 68 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 AC091959.1-201ENST00000495857 238 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 RNU6-1170P-201ENST00000515974 106 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.666-201ENST00000516187 112 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 RNU6-1110P-201ENST00000516462 101 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 AP003484.1-201ENST00000530974 250 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 AL008718.3-201ENST00000610217 321 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 AC090574.1-201ENST00000623186 233 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 MIR6767-201ENST00000637302 66 ntBASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.52□□□□□ -2.33
CCDC54Q8NEL0 RNU6-1272P-201ENST00000362776 107 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.168-201ENST00000363740 102 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 RNU6-899P-201ENST00000363947 107 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.370-201ENST00000365589 108 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 SNORA22B-201ENST00000383876 138 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 SNORA24-201ENST00000384096 131 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 RNU6-662P-201ENST00000384253 104 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 SNORA51.10-201ENST00000384418 136 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.569-201ENST00000384749 103 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 BTF3P11-201ENST00000426582 477 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 RNU7-149P-201ENST00000516739 59 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 AC133485.1-201ENST00000567176 124 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 AC138907.6-201ENST00000568401 126 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 MIR2681-201ENST00000581814 105 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 AL049861.1-201ENST00000603130 150 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 AC007742.2-201ENST00000618226 398 ntBASIC0.51□□□□□ -2.33
CCDC54Q8NEL0 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
CCDC54Q8NEL0 RNU4-90P-201ENST00000362773 141 ntBASIC0.5□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.217-201ENST00000364214 105 ntBASIC0.5□□□□□ -2.33
CCDC54Q8NEL0 RNU1-93P-201ENST00000364704 169 ntBASIC0.5□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.486-201ENST00000384398 107 ntBASIC0.5□□□□□ -2.33
CCDC54Q8NEL0 RNU6-110P-201ENST00000384508 104 ntBASIC0.5□□□□□ -2.33
CCDC54Q8NEL0 MIR508-201ENST00000384857 115 ntBASIC0.5□□□□□ -2.33
CCDC54Q8NEL0 RNU6-205P-201ENST00000390858 107 ntBASIC0.5□□□□□ -2.33
CCDC54Q8NEL0 MTND5P22-201ENST00000458380 195 ntBASIC0.5□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.641-201ENST00000459414 105 ntBASIC0.5□□□□□ -2.33
CCDC54Q8NEL0 RNA5SP102-201ENST00000516865 106 ntBASIC0.5□□□□□ -2.33
CCDC54Q8NEL0 uc_338.4-201ENST00000616635 176 ntBASIC0.5□□□□□ -2.33
CCDC54Q8NEL0 AL160413.1-201ENST00000622780 310 ntBASIC0.5□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.153-201ENST00000363615 91 ntBASIC0.49□□□□□ -2.33
CCDC54Q8NEL0 RNU6-1205P-201ENST00000363625 106 ntBASIC0.49□□□□□ -2.33
CCDC54Q8NEL0 RNU6-290P-201ENST00000365212 101 ntBASIC0.49□□□□□ -2.33
CCDC54Q8NEL0 SNORA63.7-201ENST00000365579 123 ntBASIC0.49□□□□□ -2.33
CCDC54Q8NEL0 MIR520E-201ENST00000384867 87 ntBASIC0.49□□□□□ -2.33
CCDC54Q8NEL0 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.49□□□□□ -2.33
CCDC54Q8NEL0 RNU6-913P-201ENST00000390913 95 ntBASIC0.49□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.587-201ENST00000391210 103 ntBASIC0.49□□□□□ -2.33
CCDC54Q8NEL0 MIR548O-201ENST00000408583 114 ntBASIC0.49□□□□□ -2.33
CCDC54Q8NEL0 Y_RNA.711-201ENST00000516993 102 ntBASIC0.49□□□□□ -2.33
CCDC54Q8NEL0 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.49□□□□□ -2.33
CCDC54Q8NEL0 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 148.1 ms