Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
TNFRSF4P43489 MIR367-201ENST00000362299 68 ntBASIC1.05□□□□□ -2.24
TNFRSF4P43489 SNORA70.7-201ENST00000384159 133 ntBASIC1.05□□□□□ -2.24
TNFRSF4P43489 MIR452-201ENST00000385020 85 ntBASIC1.05□□□□□ -2.24
TNFRSF4P43489 MT-TW-201ENST00000387382 68 ntBASIC1.05□□□□□ -2.24
TNFRSF4P43489 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.05□□□□□ -2.24
TNFRSF4P43489 HMGN2P32-201ENST00000444648 269 ntBASIC1.05□□□□□ -2.24
TNFRSF4P43489 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.05□□□□□ -2.24
TNFRSF4P43489 RNU6-1045P-201ENST00000516321 107 ntBASIC1.05□□□□□ -2.24
TNFRSF4P43489 MIR5692C2-201ENST00000577959 77 ntBASIC1.05□□□□□ -2.24
TNFRSF4P43489 SNORD114-21-201ENST00000606412 72 ntBASIC1.05□□□□□ -2.24
TNFRSF4P43489 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.05□□□□□ -2.24
TNFRSF4P43489 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.04□□□□□ -2.24
TNFRSF4P43489 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.04□□□□□ -2.24
TNFRSF4P43489 Y_RNA.117-201ENST00000363294 101 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 SNORD14E-201ENST00000364009 85 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 Y_RNA.217-201ENST00000364214 105 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 Y_RNA.275-201ENST00000364726 110 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 SNORD50B-201ENST00000364995 70 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 Y_RNA.396-201ENST00000383949 103 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 RNU6-1289P-201ENST00000384431 106 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 MIR526A1-201ENST00000384897 85 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 MIR516B2-201ENST00000385190 85 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 MIR613-201ENST00000385248 95 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 MIR548J-201ENST00000408833 112 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 RNU6-383P-201ENST00000410864 94 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 RNU6-1054P-201ENST00000411293 104 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 AL358176.2-201ENST00000425769 204 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.04□□□□□ -2.24
TNFRSF4P43489 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.04□□□□□ -2.24
TNFRSF4P43489 AL118496.2-201ENST00000448300 230 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 Y_RNA.641-201ENST00000459414 105 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 AC048334.1-201ENST00000477975 159 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.04□□□□□ -2.24
TNFRSF4P43489 AL008718.3-201ENST00000610217 321 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 MIR6515-201ENST00000619843 57 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 snoU18.1-201ENST00000629629 71 ntBASIC1.04□□□□□ -2.24
TNFRSF4P43489 UBE2WP1-201ENST00000362030 340 ntBASIC1.03□□□□□ -2.24
TNFRSF4P43489 Y_RNA.14-201ENST00000362415 103 ntBASIC1.03□□□□□ -2.24
TNFRSF4P43489 Y_RNA.354-201ENST00000365448 111 ntBASIC1.03□□□□□ -2.24
TNFRSF4P43489 RNU6-144P-201ENST00000383951 107 ntBASIC1.03□□□□□ -2.24
TNFRSF4P43489 RNU6-910P-201ENST00000390844 107 ntBASIC1.03□□□□□ -2.24
TNFRSF4P43489 MIR1302-3-201ENST00000408128 138 ntBASIC1.03□□□□□ -2.24
TNFRSF4P43489 MIR1298-201ENST00000408783 112 ntBASIC1.03□□□□□ -2.24
TNFRSF4P43489 AC245047.7-201ENST00000440265 293 ntBASIC1.03□□□□□ -2.24
TNFRSF4P43489 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.03□□□□□ -2.24
TNFRSF4P43489 SNORD116-28-201ENST00000516123 91 ntBASIC1.03□□□□□ -2.24
TNFRSF4P43489 RNU6-1007P-201ENST00000516586 107 ntBASIC1.03□□□□□ -2.24
TNFRSF4P43489 AC006006.1-201ENST00000603082 144 ntBASIC1.03□□□□□ -2.24
TNFRSF4P43489 MIR6857-201ENST00000613267 93 ntBASIC1.03□□□□□ -2.24
TNFRSF4P43489 U2.14-201ENST00000615943 113 ntBASIC1.03□□□□□ -2.24
TNFRSF4P43489 Y_RNA.54-201ENST00000362766 105 ntBASIC1.02□□□□□ -2.25
TNFRSF4P43489 RNU6-674P-201ENST00000363831 107 ntBASIC1.02□□□□□ -2.25
TNFRSF4P43489 RNU4-38P-201ENST00000364472 129 ntBASIC1.02□□□□□ -2.25
TNFRSF4P43489 RNU6-969P-201ENST00000383900 105 ntBASIC1.02□□□□□ -2.25
TNFRSF4P43489 RNU6-211P-201ENST00000384047 107 ntBASIC1.02□□□□□ -2.25
TNFRSF4P43489 RNU6-472P-201ENST00000384299 107 ntBASIC1.02□□□□□ -2.25
TNFRSF4P43489 AC023449.1-201ENST00000454464 154 ntBASIC1.02□□□□□ -2.25
TNFRSF4P43489 NDUFA4P2-201ENST00000489989 244 ntBASIC1.02□□□□□ -2.25
TNFRSF4P43489 MTCO2P24-201ENST00000515611 426 ntBASIC1.02□□□□□ -2.25
TNFRSF4P43489 MIR4724-201ENST00000579485 89 ntBASIC1.02□□□□□ -2.25
TNFRSF4P43489 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.02□□□□□ -2.25
TNFRSF4P43489 MIR335-201ENST00000362173 94 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 RNU1-124P-201ENST00000363861 145 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 RNU4-10P-201ENST00000364383 140 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 RNU6-740P-201ENST00000364734 105 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 RNU6-442P-201ENST00000383968 104 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 MIR532-201ENST00000385025 91 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 MIR136-201ENST00000385207 82 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 Y_RNA.590-201ENST00000410140 107 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.01□□□□□ -2.25
TNFRSF4P43489 MTCYBP9-201ENST00000431021 303 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 RPS29P28-201ENST00000446439 141 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.01□□□□□ -2.25
TNFRSF4P43489 Y_RNA.679-201ENST00000516416 91 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 SNORD111.1-201ENST00000516421 86 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.01□□□□□ -2.25
TNFRSF4P43489 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.01□□□□□ -2.25
TNFRSF4P43489 AC087685.1-201ENST00000587507 141 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 Y_RNA.802-201ENST00000614892 130 ntBASIC1.01□□□□□ -2.25
TNFRSF4P43489 AC068700.1-201ENST00000565862 3754 ntBASIC1□□□□□ -2.25
TNFRSF4P43489 MIR373-201ENST00000362273 69 ntBASIC1□□□□□ -2.25
TNFRSF4P43489 Y_RNA.288-201ENST00000364854 92 ntBASIC1□□□□□ -2.25
TNFRSF4P43489 Y_RNA.336-201ENST00000365307 109 ntBASIC1□□□□□ -2.25
TNFRSF4P43489 SNORD12-201ENST00000391002 90 ntBASIC1□□□□□ -2.25
TNFRSF4P43489 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1□□□□□ -2.25
TNFRSF4P43489 RNU2-38P-201ENST00000410856 79 ntBASIC1□□□□□ -2.25
TNFRSF4P43489 SNORD11-201ENST00000459124 84 ntBASIC1□□□□□ -2.25
TNFRSF4P43489 AL049861.1-201ENST00000603130 150 ntBASIC1□□□□□ -2.25
TNFRSF4P43489 AC211469.2-201ENST00000605461 205 ntBASIC1□□□□□ -2.25
TNFRSF4P43489 Y_RNA.133-201ENST00000363428 110 ntBASIC0.99□□□□□ -2.25
TNFRSF4P43489 RNU6-651P-201ENST00000411040 105 ntBASIC0.99□□□□□ -2.25
TNFRSF4P43489 OR2A41P-201ENST00000473586 105 ntBASIC0.99□□□□□ -2.25
TNFRSF4P43489 SNORA18.7-201ENST00000516910 131 ntBASIC0.99□□□□□ -2.25
TNFRSF4P43489 AC090142.3-201ENST00000519012 385 ntBASIC0.99□□□□□ -2.25
TNFRSF4P43489 AC008507.4-201ENST00000585464 127 ntBASIC0.99□□□□□ -2.25
TNFRSF4P43489 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.99□□□□□ -2.25
TNFRSF4P43489 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
TNFRSF4P43489 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
TNFRSF4P43489 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 173.7 ms