Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MIR570-201ENST00000384917 97 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 RNU6-763P-201ENST00000390865 106 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 SNORD72-201ENST00000390994 80 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 RPS3AP1-201ENST00000413190 320 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 ELOCP20-201ENST00000422460 345 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 AC245047.8-201ENST00000456455 284 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 RNU7-21P-201ENST00000459430 62 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 SNORD123-201ENST00000459473 70 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 RNU6-113P-201ENST00000516653 101 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.84□□□□□ -2.27
VPS39Q96JC1 RPL23AP91-201ENST00000569211 455 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 MIR4764-201ENST00000580680 88 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 MIR548AR-201ENST00000582191 57 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 AC005357.1-201ENST00000588399 301 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 AC136443.5-201ENST00000603741 370 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
VPS39Q96JC1 snoU2_19.2-201ENST00000363024 80 ntBASIC0.83□□□□□ -2.28
VPS39Q96JC1 RNA5SP264-201ENST00000363115 107 ntBASIC0.83□□□□□ -2.28
VPS39Q96JC1 Y_RNA.183-201ENST00000363882 113 ntBASIC0.83□□□□□ -2.28
VPS39Q96JC1 Y_RNA.214-201ENST00000364201 112 ntBASIC0.83□□□□□ -2.28
VPS39Q96JC1 MIR100-201ENST00000385259 80 ntBASIC0.83□□□□□ -2.28
VPS39Q96JC1 MIR1185-1-201ENST00000408598 86 ntBASIC0.83□□□□□ -2.28
VPS39Q96JC1 MIR1276-201ENST00000408707 83 ntBASIC0.83□□□□□ -2.28
VPS39Q96JC1 RPL21P38-201ENST00000418090 167 ntBASIC0.83□□□□□ -2.28
VPS39Q96JC1 AC024067.1-201ENST00000426199 223 ntBASIC0.83□□□□□ -2.28
VPS39Q96JC1 SNRPGP14-201ENST00000435400 219 ntBASIC0.83□□□□□ -2.28
VPS39Q96JC1 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.83□□□□□ -2.28
VPS39Q96JC1 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.83□□□□□ -2.28
VPS39Q96JC1 RNU6-351P-201ENST00000516097 100 ntBASIC0.83□□□□□ -2.28
VPS39Q96JC1 Y_RNA.713-201ENST00000517013 96 ntBASIC0.83□□□□□ -2.28
VPS39Q96JC1 AC013244.2-201ENST00000603396 103 ntBASIC0.83□□□□□ -2.28
VPS39Q96JC1 Y_RNA.330-201ENST00000365230 109 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 Y_RNA.460-201ENST00000384255 102 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 MIR146A-201ENST00000385201 99 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 AL603910.2-201ENST00000407268 136 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 MIR1252-201ENST00000408861 65 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 RNU6-101P-201ENST00000410323 104 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 RNU6-383P-201ENST00000410864 94 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.82□□□□□ -2.28
VPS39Q96JC1 MTCO1P5-201ENST00000433573 344 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 RNU7-90P-201ENST00000459216 62 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 RNU6-437P-201ENST00000459408 95 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 Y_RNA.637-201ENST00000459424 114 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 Y_RNA.711-201ENST00000516993 102 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 AP003716.2-201ENST00000528260 108 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 AC020661.2-201ENST00000560114 134 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 MIR4698-201ENST00000577795 80 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 MIR3171-201ENST00000584270 74 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 MIR6504-201ENST00000613520 61 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 JPX_2.1-201ENST00000614161 69 ntBASIC0.82□□□□□ -2.28
VPS39Q96JC1 Y_RNA.16-201ENST00000362421 102 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 Y_RNA.64-201ENST00000362845 102 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 Y_RNA.128-201ENST00000363391 112 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 SNORD14E-201ENST00000364009 85 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 RNU6-268P-201ENST00000364174 107 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 Y_RNA.541-201ENST00000384640 113 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 Y_RNA.569-201ENST00000384749 103 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 Y_RNA.604-201ENST00000410574 102 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 AL606490.4-201ENST00000423117 127 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 MTCO2P12-201ENST00000427426 682 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 RNU6-1153P-201ENST00000516760 105 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 RNU6-988P-201ENST00000519081 107 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.81□□□□□ -2.28
VPS39Q96JC1 AC023827.1-201ENST00000569247 97 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 AC134503.1-201ENST00000633048 54 ntBASIC0.81□□□□□ -2.28
VPS39Q96JC1 Y_RNA.191-201ENST00000363972 113 ntBASIC0.8□□□□□ -2.28
VPS39Q96JC1 MIR499A-201ENST00000384903 122 ntBASIC0.8□□□□□ -2.28
VPS39Q96JC1 MTND5P22-201ENST00000458380 195 ntBASIC0.8□□□□□ -2.28
VPS39Q96JC1 SNORD11-201ENST00000459124 84 ntBASIC0.8□□□□□ -2.28
VPS39Q96JC1 RNY3P15-201ENST00000516297 97 ntBASIC0.8□□□□□ -2.28
VPS39Q96JC1 RNA5SP255-201ENST00000516370 107 ntBASIC0.8□□□□□ -2.28
VPS39Q96JC1 AC131281.1-201ENST00000522984 164 ntBASIC0.8□□□□□ -2.28
VPS39Q96JC1 MIR3973-201ENST00000579824 107 ntBASIC0.8□□□□□ -2.28
VPS39Q96JC1 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
VPS39Q96JC1 MIR6866-201ENST00000638146 69 ntBASIC0.8□□□□□ -2.28
VPS39Q96JC1 HSBP1P2-201ENST00000299671 229 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 MIR103A2-201ENST00000362154 78 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 MIR96-201ENST00000362288 78 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 RNU6-770P-201ENST00000363929 105 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 Y_RNA.210-201ENST00000364161 110 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 SNORA63.7-201ENST00000365579 123 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 RNU6-662P-201ENST00000384253 104 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 MIR548P-201ENST00000408336 84 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 MIR1302-7-201ENST00000408841 72 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.79□□□□□ -2.28
VPS39Q96JC1 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.79□□□□□ -2.28
VPS39Q96JC1 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.79□□□□□ -2.28
VPS39Q96JC1 RN7SKP164-201ENST00000516138 266 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 RNU7-181P-201ENST00000517234 74 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 AC113195.1-201ENST00000579952 141 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.79□□□□□ -2.28
VPS39Q96JC1 AC008507.4-201ENST00000585464 127 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 MIR6767-201ENST00000637302 66 ntBASIC0.79□□□□□ -2.28
VPS39Q96JC1 Y_RNA.19-201ENST00000362462 99 ntBASIC0.78□□□□□ -2.28
VPS39Q96JC1 RNU4-90P-201ENST00000362773 141 ntBASIC0.78□□□□□ -2.28
VPS39Q96JC1 Y_RNA.136-201ENST00000363444 102 ntBASIC0.78□□□□□ -2.28
VPS39Q96JC1 RNU6-674P-201ENST00000363831 107 ntBASIC0.78□□□□□ -2.28
VPS39Q96JC1 RNU6-654P-201ENST00000364373 107 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 211.8 ms