Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 Y_RNA.331-201ENST00000365267 102 ntBASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 VTRNA1-3-201ENST00000365645 89 ntBASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 SNORA51.10-201ENST00000384418 136 ntBASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 Y_RNA.570-201ENST00000384750 101 ntBASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 RNU6-1237P-201ENST00000384777 107 ntBASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 MIR570-201ENST00000384917 97 ntBASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 Y_RNA.599-201ENST00000410489 109 ntBASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 AC096644.2-201ENST00000429278 159 ntBASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 FGF7P6-202ENST00000451282 293 ntBASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 MTCO3P10-201ENST00000455912 772 ntBASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 AL355375.2-201ENST00000574825 175 ntBASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.51□□□□□ -2.33
HDDC3Q8N4P3 RNU6-490P-201ENST00000362985 107 ntBASIC0.5□□□□□ -2.33
HDDC3Q8N4P3 Y_RNA.310-201ENST00000365063 113 ntBASIC0.5□□□□□ -2.33
HDDC3Q8N4P3 SNORD81.2-201ENST00000365153 76 ntBASIC0.5□□□□□ -2.33
HDDC3Q8N4P3 RNU6-708P-201ENST00000384217 107 ntBASIC0.5□□□□□ -2.33
HDDC3Q8N4P3 AL590004.1-201ENST00000405321 300 ntBASIC0.5□□□□□ -2.33
HDDC3Q8N4P3 NDUFAF4P4-201ENST00000454883 502 ntBASIC0.5□□□□□ -2.33
HDDC3Q8N4P3 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.5□□□□□ -2.33
HDDC3Q8N4P3 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.5□□□□□ -2.33
HDDC3Q8N4P3 AC006600.1-201ENST00000572529 153 ntBASIC0.5□□□□□ -2.33
HDDC3Q8N4P3 AC104695.3-201ENST00000604052 296 ntBASIC0.5□□□□□ -2.33
HDDC3Q8N4P3 AP003357.1-201ENST00000604497 148 ntBASIC0.5□□□□□ -2.33
HDDC3Q8N4P3 AC113139.1-201ENST00000605049 239 ntBASIC0.5□□□□□ -2.33
HDDC3Q8N4P3 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.5□□□□□ -2.33
HDDC3Q8N4P3 Y_RNA.168-201ENST00000363740 102 ntBASIC0.49□□□□□ -2.33
HDDC3Q8N4P3 U8.17-201ENST00000391292 132 ntBASIC0.49□□□□□ -2.33
HDDC3Q8N4P3 MTCO2P27-201ENST00000420740 428 ntBASIC0.49□□□□□ -2.33
HDDC3Q8N4P3 AC127455.1-201ENST00000565496 145 ntBASIC0.49□□□□□ -2.33
HDDC3Q8N4P3 VN1R91P-201ENST00000594377 169 ntBASIC0.49□□□□□ -2.33
HDDC3Q8N4P3 AC025253.1-201ENST00000613623 543 ntBASIC0.49□□□□□ -2.33
HDDC3Q8N4P3 RNU6-1209P-201ENST00000363655 107 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 Y_RNA.376-201ENST00000365638 108 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 SNORA50A-201ENST00000384225 134 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 MT-TL1-201ENST00000386347 75 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 AL157398.1-201ENST00000452981 186 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 SCARNA8-201ENST00000515924 131 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 RNU6-830P-201ENST00000516353 107 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 RNU6-1007P-201ENST00000516586 107 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 MIR2681-201ENST00000581814 105 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 MIR5188-201ENST00000583467 113 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 DEFB117-201ENST00000602356 141 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 U6atac.1-201ENST00000616025 117 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 MIR548AY-201ENST00000617669 107 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 AC015726.2-201ENST00000620112 122 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 AC138305.3-201ENST00000624988 240 ntBASIC0.48□□□□□ -2.33
HDDC3Q8N4P3 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.47□□□□□ -2.33
HDDC3Q8N4P3 Y_RNA.259-201ENST00000364619 101 ntBASIC0.47□□□□□ -2.33
HDDC3Q8N4P3 SNORA1.2-201ENST00000365189 134 ntBASIC0.47□□□□□ -2.33
HDDC3Q8N4P3 MTCO2P33-201ENST00000402100 465 ntBASIC0.47□□□□□ -2.33
HDDC3Q8N4P3 AC091951.2-201ENST00000500762 203 ntBASIC0.47□□□□□ -2.33
HDDC3Q8N4P3 RNU7-115P-201ENST00000516433 55 ntBASIC0.47□□□□□ -2.33
HDDC3Q8N4P3 AP000753.3-201ENST00000604083 169 ntBASIC0.47□□□□□ -2.33
HDDC3Q8N4P3 Y_RNA.772-201ENST00000606692 102 ntBASIC0.47□□□□□ -2.33
HDDC3Q8N4P3 AC022306.2-201ENST00000617563 647 ntBASIC0.47□□□□□ -2.33
HDDC3Q8N4P3 Y_RNA.280-201ENST00000364765 112 ntBASIC0.46□□□□□ -2.34
HDDC3Q8N4P3 Y_RNA.537-201ENST00000384626 109 ntBASIC0.46□□□□□ -2.34
HDDC3Q8N4P3 HMGN1P10-201ENST00000474557 553 ntBASIC0.46□□□□□ -2.34
HDDC3Q8N4P3 RNA5SP395-201ENST00000516567 118 ntBASIC0.46□□□□□ -2.34
HDDC3Q8N4P3 RNU7-110P-201ENST00000516891 62 ntBASIC0.46□□□□□ -2.34
HDDC3Q8N4P3 RNU7-181P-201ENST00000517234 74 ntBASIC0.46□□□□□ -2.34
HDDC3Q8N4P3 AL080274.1-201ENST00000605565 220 ntBASIC0.46□□□□□ -2.34
HDDC3Q8N4P3 RNU6-268P-201ENST00000364174 107 ntBASIC0.45□□□□□ -2.34
HDDC3Q8N4P3 Y_RNA.242-201ENST00000364473 110 ntBASIC0.45□□□□□ -2.34
HDDC3Q8N4P3 U8.7-201ENST00000364940 136 ntBASIC0.45□□□□□ -2.34
HDDC3Q8N4P3 MIR559-201ENST00000385188 96 ntBASIC0.45□□□□□ -2.34
HDDC3Q8N4P3 MIR140-201ENST00000385282 100 ntBASIC0.45□□□□□ -2.34
HDDC3Q8N4P3 NDUFA4P2-201ENST00000489989 244 ntBASIC0.45□□□□□ -2.34
HDDC3Q8N4P3 RNU6-699P-201ENST00000517081 110 ntBASIC0.45□□□□□ -2.34
HDDC3Q8N4P3 MIR4514-201ENST00000581410 57 ntBASIC0.45□□□□□ -2.34
HDDC3Q8N4P3 AC008507.4-201ENST00000585464 127 ntBASIC0.45□□□□□ -2.34
HDDC3Q8N4P3 AC011373.1-201ENST00000607270 237 ntBASIC0.45□□□□□ -2.34
HDDC3Q8N4P3 RNY1P8-201ENST00000383970 114 ntBASIC0.44□□□□□ -2.34
HDDC3Q8N4P3 Y_RNA.428-201ENST00000384078 102 ntBASIC0.44□□□□□ -2.34
HDDC3Q8N4P3 SNRPGP14-201ENST00000435400 219 ntBASIC0.44□□□□□ -2.34
HDDC3Q8N4P3 RN7SKP12-201ENST00000516275 143 ntBASIC0.44□□□□□ -2.34
HDDC3Q8N4P3 RNU6-977P-201ENST00000516411 103 ntBASIC0.44□□□□□ -2.34
HDDC3Q8N4P3 MIR548AO-201ENST00000579992 96 ntBASIC0.44□□□□□ -2.34
HDDC3Q8N4P3 MIR4423-201ENST00000580922 80 ntBASIC0.44□□□□□ -2.34
HDDC3Q8N4P3 MIR4791-201ENST00000607666 84 ntBASIC0.44□□□□□ -2.34
HDDC3Q8N4P3 MIR377-201ENST00000362145 69 ntBASIC0.43□□□□□ -2.34
HDDC3Q8N4P3 Y_RNA.458-201ENST00000384240 102 ntBASIC0.43□□□□□ -2.34
HDDC3Q8N4P3 Y_RNA.462-201ENST00000384268 102 ntBASIC0.43□□□□□ -2.34
HDDC3Q8N4P3 Y_RNA.474-201ENST00000384341 102 ntBASIC0.43□□□□□ -2.34
HDDC3Q8N4P3 MIR520F-201ENST00000384824 87 ntBASIC0.43□□□□□ -2.34
HDDC3Q8N4P3 MIR573-201ENST00000384964 99 ntBASIC0.43□□□□□ -2.34
HDDC3Q8N4P3 MIR520H-201ENST00000385126 88 ntBASIC0.43□□□□□ -2.34
HDDC3Q8N4P3 AF228730.4-201ENST00000421457 183 ntBASIC0.43□□□□□ -2.34
HDDC3Q8N4P3 RNU6-437P-201ENST00000459408 95 ntBASIC0.43□□□□□ -2.34
HDDC3Q8N4P3 RPL23AP91-201ENST00000569211 455 ntBASIC0.43□□□□□ -2.34
HDDC3Q8N4P3 MTND1P7-201ENST00000632801 297 ntBASIC0.43□□□□□ -2.34
HDDC3Q8N4P3 Y_RNA.248-201ENST00000364501 109 ntBASIC0.42□□□□□ -2.34
HDDC3Q8N4P3 RNU6-21P-201ENST00000384710 107 ntBASIC0.42□□□□□ -2.34
HDDC3Q8N4P3 MT-TN-201ENST00000387400 73 ntBASIC0.42□□□□□ -2.34
HDDC3Q8N4P3 RNU6-205P-201ENST00000390858 107 ntBASIC0.42□□□□□ -2.34
HDDC3Q8N4P3 RNU2-70P-201ENST00000410718 179 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms