Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC046143.2-201ENST00000609789 160 ntBASIC2.42□□□□□ -2.02
USP39Q53GS9 AC007336.1-201ENST00000576365 3828 ntBASIC2.41□□□□□ -2.02
USP39Q53GS9 RNU6-743P-201ENST00000364151 106 ntBASIC2.41□□□□□ -2.02
USP39Q53GS9 Y_RNA.528-201ENST00000384575 108 ntBASIC2.41□□□□□ -2.02
USP39Q53GS9 MIR1289-2-201ENST00000408360 111 ntBASIC2.41□□□□□ -2.02
USP39Q53GS9 HMGN2P34-201ENST00000437647 269 ntBASIC2.41□□□□□ -2.02
USP39Q53GS9 RPS29P24-201ENST00000486345 171 ntBASIC2.41□□□□□ -2.02
USP39Q53GS9 HMGN1P7-201ENST00000491722 313 ntBASIC2.41□□□□□ -2.02
USP39Q53GS9 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.41□□□□□ -2.02
USP39Q53GS9 AC103810.6-201ENST00000606708 136 ntBASIC2.41□□□□□ -2.02
USP39Q53GS9 MIR6895-201ENST00000613497 78 ntBASIC2.41□□□□□ -2.02
USP39Q53GS9 MIR1291-201ENST00000627649 87 ntBASIC2.41□□□□□ -2.02
USP39Q53GS9 MIR376A2-201ENST00000636782 80 ntBASIC2.41□□□□□ -2.02
USP39Q53GS9 U6.108-201ENST00000637764 58 ntBASIC2.41□□□□□ -2.02
USP39Q53GS9 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
USP39Q53GS9 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
USP39Q53GS9 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.4□□□□□ -2.02
USP39Q53GS9 SNORA3A-201ENST00000364113 130 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 SNORD24-201ENST00000383884 75 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 Y_RNA.549-201ENST00000384657 102 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 SNORA12.1-201ENST00000390873 148 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 RNU6-482P-201ENST00000391068 107 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 SNORD77.3-201ENST00000391113 65 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 SNRPGP10-201ENST00000432323 225 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 AC026436.1-201ENST00000510537 270 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 RNU6-991P-201ENST00000516168 107 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 Y_RNA.666-201ENST00000516187 112 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 Y_RNA.677-201ENST00000516401 85 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 RNU6-1149P-201ENST00000516810 97 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 RNU6-1270P-201ENST00000517128 108 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 AC008507.4-201ENST00000585464 127 ntBASIC2.4□□□□□ -2.03
USP39Q53GS9 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
USP39Q53GS9 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
USP39Q53GS9 SNORD114-1-201ENST00000362705 72 ntBASIC2.39□□□□□ -2.03
USP39Q53GS9 RNA5SP125-201ENST00000364843 120 ntBASIC2.39□□□□□ -2.03
USP39Q53GS9 RNU6-905P-201ENST00000384434 107 ntBASIC2.39□□□□□ -2.03
USP39Q53GS9 MIR1253-201ENST00000408273 105 ntBASIC2.39□□□□□ -2.03
USP39Q53GS9 RNA5SP181-201ENST00000410246 98 ntBASIC2.39□□□□□ -2.03
USP39Q53GS9 RNU6-1186P-201ENST00000410429 97 ntBASIC2.39□□□□□ -2.03
USP39Q53GS9 HMGN2P3-201ENST00000433603 273 ntBASIC2.39□□□□□ -2.03
USP39Q53GS9 HMGN2P5-201ENST00000436882 273 ntBASIC2.39□□□□□ -2.03
USP39Q53GS9 AL161788.1-201ENST00000441805 169 ntBASIC2.39□□□□□ -2.03
USP39Q53GS9 SNORA4.4-201ENST00000515921 135 ntBASIC2.39□□□□□ -2.03
USP39Q53GS9 RNU7-99P-201ENST00000516271 62 ntBASIC2.39□□□□□ -2.03
USP39Q53GS9 RNU6-1291P-201ENST00000516591 104 ntBASIC2.39□□□□□ -2.03
USP39Q53GS9 AC007012.1-201ENST00000567192 175 ntBASIC2.39□□□□□ -2.03
USP39Q53GS9 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
USP39Q53GS9 snoU2-30.2-201ENST00000362805 70 ntBASIC2.38□□□□□ -2.03
USP39Q53GS9 Y_RNA.85-201ENST00000363014 111 ntBASIC2.38□□□□□ -2.03
USP39Q53GS9 RNU6-1107P-201ENST00000364817 104 ntBASIC2.38□□□□□ -2.03
USP39Q53GS9 Y_RNA.348-201ENST00000365403 103 ntBASIC2.38□□□□□ -2.03
USP39Q53GS9 Y_RNA.366-201ENST00000365540 102 ntBASIC2.38□□□□□ -2.03
USP39Q53GS9 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
USP39Q53GS9 MIR144-201ENST00000384886 86 ntBASIC2.38□□□□□ -2.03
USP39Q53GS9 MIR518F-201ENST00000384973 87 ntBASIC2.38□□□□□ -2.03
USP39Q53GS9 RNA5SP467-201ENST00000391274 118 ntBASIC2.38□□□□□ -2.03
USP39Q53GS9 Y_RNA.621-201ENST00000411065 96 ntBASIC2.38□□□□□ -2.03
USP39Q53GS9 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.38□□□□□ -2.03
USP39Q53GS9 AC011406.1-201ENST00000512440 370 ntBASIC2.38□□□□□ -2.03
USP39Q53GS9 RNU6-113P-201ENST00000516653 101 ntBASIC2.38□□□□□ -2.03
USP39Q53GS9 MIR5739-201ENST00000619803 80 ntBASIC2.38□□□□□ -2.03
USP39Q53GS9 AC016717.2-201ENST00000609089 5141 ntBASIC2.38□□□□□ -2.03
USP39Q53GS9 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.38□□□□□ -2.03
USP39Q53GS9 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
USP39Q53GS9 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.37□□□□□ -2.03
USP39Q53GS9 RNU6-640P-201ENST00000363693 105 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 MIR570-201ENST00000384917 97 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 RNA5SP136-201ENST00000410906 107 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 AC233266.1-201ENST00000454518 96 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 RNU6-693P-201ENST00000516134 107 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 RNU6-412P-201ENST00000516434 106 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 SNORA48.11-201ENST00000517015 89 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 RNU6-537P-201ENST00000517277 103 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 AC121758.2-201ENST00000553271 193 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 AC242852.1-201ENST00000612151 96 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 U4atac.1-201ENST00000618345 95 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 AC009831.4-201ENST00000620744 325 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 AC244015.1-201ENST00000622301 99 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 AC106754.2-201ENST00000623006 233 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 MIR6079-201ENST00000635807 62 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 MIR338-201ENST00000636369 67 ntBASIC2.37□□□□□ -2.03
USP39Q53GS9 AC018630.2-201ENST00000534866 2403 ntBASIC2.36□□□□□ -2.03
USP39Q53GS9 Y_RNA.328-201ENST00000365208 113 ntBASIC2.36□□□□□ -2.03
USP39Q53GS9 SNORA6-201ENST00000384033 151 ntBASIC2.36□□□□□ -2.03
USP39Q53GS9 SNORD12C-201ENST00000386307 89 ntBASIC2.36□□□□□ -2.03
USP39Q53GS9 SNORD23.1-201ENST00000408212 104 ntBASIC2.36□□□□□ -2.03
USP39Q53GS9 RNY4P30-201ENST00000410216 95 ntBASIC2.36□□□□□ -2.03
USP39Q53GS9 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.36□□□□□ -2.03
USP39Q53GS9 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.36□□□□□ -2.03
USP39Q53GS9 RNU6-341P-201ENST00000516973 96 ntBASIC2.36□□□□□ -2.03
USP39Q53GS9 AC007229.1-201ENST00000590455 412 ntBASIC2.36□□□□□ -2.03
USP39Q53GS9 AL137067.1-201ENST00000615933 120 ntBASIC2.36□□□□□ -2.03
USP39Q53GS9 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
USP39Q53GS9 RNU6-766P-201ENST00000362478 107 ntBASIC2.35□□□□□ -2.03
USP39Q53GS9 SNORA33-201ENST00000363664 130 ntBASIC2.35□□□□□ -2.03
USP39Q53GS9 MIR764-201ENST00000390811 85 ntBASIC2.35□□□□□ -2.03
USP39Q53GS9 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.35□□□□□ -2.03
USP39Q53GS9 COX6CP6-201ENST00000490840 228 ntBASIC2.35□□□□□ -2.03
USP39Q53GS9 AC018868.1-201ENST00000491307 315 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms