Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNU4-10P-201ENST00000364383 140 ntBASIC1.25□□□□□ -2.21
SOX3P41225 Y_RNA.277-201ENST00000364754 102 ntBASIC1.25□□□□□ -2.21
SOX3P41225 RNU6-163P-201ENST00000384396 106 ntBASIC1.25□□□□□ -2.21
SOX3P41225 RNU6-1289P-201ENST00000384431 106 ntBASIC1.25□□□□□ -2.21
SOX3P41225 MIR1278-201ENST00000408753 81 ntBASIC1.25□□□□□ -2.21
SOX3P41225 SNX2P2-201ENST00000424553 323 ntBASIC1.25□□□□□ -2.21
SOX3P41225 BTF3P11-201ENST00000426582 477 ntBASIC1.25□□□□□ -2.21
SOX3P41225 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.25□□□□□ -2.21
SOX3P41225 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.25□□□□□ -2.21
SOX3P41225 RPL39P38-201ENST00000467018 153 ntBASIC1.25□□□□□ -2.21
SOX3P41225 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.25□□□□□ -2.21
SOX3P41225 AC114811.1-201ENST00000507207 168 ntBASIC1.25□□□□□ -2.21
SOX3P41225 Y_RNA.673-201ENST00000516306 88 ntBASIC1.25□□□□□ -2.21
SOX3P41225 Y_RNA.714-201ENST00000517065 90 ntBASIC1.25□□□□□ -2.21
SOX3P41225 AL359821.1-201ENST00000605519 182 ntBASIC1.25□□□□□ -2.21
SOX3P41225 AC062037.2-201ENST00000610137 73 ntBASIC1.25□□□□□ -2.21
SOX3P41225 AL157834.3-201ENST00000615543 103 ntBASIC1.25□□□□□ -2.21
SOX3P41225 Y_RNA.60-201ENST00000362831 98 ntBASIC1.24□□□□□ -2.21
SOX3P41225 Y_RNA.288-201ENST00000364854 92 ntBASIC1.24□□□□□ -2.21
SOX3P41225 SNORD50B-201ENST00000364995 70 ntBASIC1.24□□□□□ -2.21
SOX3P41225 Y_RNA.556-201ENST00000384677 113 ntBASIC1.24□□□□□ -2.21
SOX3P41225 Y_RNA.572-201ENST00000384757 98 ntBASIC1.24□□□□□ -2.21
SOX3P41225 RNU6-131P-201ENST00000391144 107 ntBASIC1.24□□□□□ -2.21
SOX3P41225 PIGPP3-201ENST00000425307 415 ntBASIC1.24□□□□□ -2.21
SOX3P41225 AC019176.1-201ENST00000518519 225 ntBASIC1.24□□□□□ -2.21
SOX3P41225 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.24□□□□□ -2.21
SOX3P41225 AL160236.1-201ENST00000556317 195 ntBASIC1.24□□□□□ -2.21
SOX3P41225 MIR3937-201ENST00000580135 106 ntBASIC1.24□□□□□ -2.21
SOX3P41225 AL513534.2-201ENST00000603836 250 ntBASIC1.24□□□□□ -2.21
SOX3P41225 JPX_2.1-201ENST00000614161 69 ntBASIC1.24□□□□□ -2.21
SOX3P41225 AC106754.2-201ENST00000623006 233 ntBASIC1.24□□□□□ -2.21
SOX3P41225 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.24□□□□□ -2.21
SOX3P41225 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
SOX3P41225 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.23□□□□□ -2.21
SOX3P41225 RNU6-1084P-201ENST00000362498 107 ntBASIC1.23□□□□□ -2.21
SOX3P41225 Y_RNA.122-201ENST00000363331 96 ntBASIC1.23□□□□□ -2.21
SOX3P41225 RNU6-702P-201ENST00000364982 107 ntBASIC1.23□□□□□ -2.21
SOX3P41225 RNU6-211P-201ENST00000384047 107 ntBASIC1.23□□□□□ -2.21
SOX3P41225 Y_RNA.447-201ENST00000384184 113 ntBASIC1.23□□□□□ -2.21
SOX3P41225 RNU6-1065P-201ENST00000384513 106 ntBASIC1.23□□□□□ -2.21
SOX3P41225 RNU6-321P-201ENST00000410912 106 ntBASIC1.23□□□□□ -2.21
SOX3P41225 RPS27P16-201ENST00000425758 201 ntBASIC1.23□□□□□ -2.21
SOX3P41225 SNORD2.1-201ENST00000458762 69 ntBASIC1.23□□□□□ -2.21
SOX3P41225 RNU1-123P-201ENST00000458950 160 ntBASIC1.23□□□□□ -2.21
SOX3P41225 AC092991.1-201ENST00000477176 376 ntBASIC1.23□□□□□ -2.21
SOX3P41225 SNORD116-28-201ENST00000516123 91 ntBASIC1.23□□□□□ -2.21
SOX3P41225 SNORD45.4-201ENST00000516629 73 ntBASIC1.23□□□□□ -2.21
SOX3P41225 AC090049.2-201ENST00000550377 109 ntBASIC1.23□□□□□ -2.21
SOX3P41225 AC068338.1-201ENST00000565567 176 ntBASIC1.23□□□□□ -2.21
SOX3P41225 AC087685.1-201ENST00000587507 141 ntBASIC1.23□□□□□ -2.21
SOX3P41225 AL353770.2-201ENST00000620024 78 ntBASIC1.23□□□□□ -2.21
SOX3P41225 Y_RNA.82-201ENST00000363000 102 ntBASIC1.22□□□□□ -2.21
SOX3P41225 Y_RNA.92-201ENST00000363043 102 ntBASIC1.22□□□□□ -2.21
SOX3P41225 Y_RNA.235-201ENST00000364412 102 ntBASIC1.22□□□□□ -2.21
SOX3P41225 snoU2-30.1-201ENST00000365012 70 ntBASIC1.22□□□□□ -2.21
SOX3P41225 Y_RNA.306-201ENST00000365015 102 ntBASIC1.22□□□□□ -2.21
SOX3P41225 Y_RNA.312-201ENST00000365089 102 ntBASIC1.22□□□□□ -2.21
SOX3P41225 Y_RNA.322-201ENST00000365151 102 ntBASIC1.22□□□□□ -2.21
SOX3P41225 SNORA2.2-201ENST00000365473 135 ntBASIC1.22□□□□□ -2.21
SOX3P41225 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.22□□□□□ -2.21
SOX3P41225 MIR758-201ENST00000390227 88 ntBASIC1.22□□□□□ -2.21
SOX3P41225 MIR1302-3-201ENST00000408128 138 ntBASIC1.22□□□□□ -2.21
SOX3P41225 RNU6-383P-201ENST00000410864 94 ntBASIC1.22□□□□□ -2.21
SOX3P41225 Y_RNA.650-201ENST00000459002 102 ntBASIC1.22□□□□□ -2.21
SOX3P41225 NDUFA4P2-201ENST00000489989 244 ntBASIC1.22□□□□□ -2.21
SOX3P41225 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.22□□□□□ -2.21
SOX3P41225 AC005840.1-201ENST00000498412 377 ntBASIC1.22□□□□□ -2.21
SOX3P41225 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.22□□□□□ -2.21
SOX3P41225 RNU6-917P-201ENST00000516294 104 ntBASIC1.22□□□□□ -2.21
SOX3P41225 Y_RNA.777-201ENST00000516982 102 ntBASIC1.22□□□□□ -2.21
SOX3P41225 RPL23AP91-201ENST00000569211 455 ntBASIC1.22□□□□□ -2.21
SOX3P41225 MIR5688-201ENST00000580619 83 ntBASIC1.22□□□□□ -2.21
SOX3P41225 MIR4282-201ENST00000583613 67 ntBASIC1.22□□□□□ -2.21
SOX3P41225 Y_RNA.771-201ENST00000598668 102 ntBASIC1.22□□□□□ -2.21
SOX3P41225 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.22□□□□□ -2.21
SOX3P41225 AL121890.5-201ENST00000620848 304 ntBASIC1.22□□□□□ -2.21
SOX3P41225 Y_RNA.789-201ENST00000622480 102 ntBASIC1.22□□□□□ -2.21
SOX3P41225 AL161722.3-201ENST00000605789 2983 ntBASIC1.22□□□□□ -2.21
SOX3P41225 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SOX3P41225 Y_RNA.54-201ENST00000362766 105 ntBASIC1.21□□□□□ -2.22
SOX3P41225 SNORD27-201ENST00000363981 72 ntBASIC1.21□□□□□ -2.22
SOX3P41225 Y_RNA.269-201ENST00000364685 89 ntBASIC1.21□□□□□ -2.22
SOX3P41225 Y_RNA.350-201ENST00000365409 98 ntBASIC1.21□□□□□ -2.22
SOX3P41225 Y_RNA.352-201ENST00000365439 102 ntBASIC1.21□□□□□ -2.22
SOX3P41225 SNORD58.1-201ENST00000391313 66 ntBASIC1.21□□□□□ -2.22
SOX3P41225 SNORD11-201ENST00000459124 84 ntBASIC1.21□□□□□ -2.22
SOX3P41225 AC004223.1-201ENST00000479840 271 ntBASIC1.21□□□□□ -2.22
SOX3P41225 TRMT112P2-201ENST00000512910 132 ntBASIC1.21□□□□□ -2.22
SOX3P41225 RNU6-111P-201ENST00000517179 105 ntBASIC1.21□□□□□ -2.22
SOX3P41225 AL512310.8-201ENST00000550183 120 ntBASIC1.21□□□□□ -2.22
SOX3P41225 MIR3664-201ENST00000579074 99 ntBASIC1.21□□□□□ -2.22
SOX3P41225 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.2□□□□□ -2.22
SOX3P41225 Y_RNA.327-201ENST00000365201 102 ntBASIC1.2□□□□□ -2.22
SOX3P41225 Y_RNA.336-201ENST00000365307 109 ntBASIC1.2□□□□□ -2.22
SOX3P41225 Y_RNA.416-201ENST00000384014 113 ntBASIC1.2□□□□□ -2.22
SOX3P41225 MIR526A1-201ENST00000384897 85 ntBASIC1.2□□□□□ -2.22
SOX3P41225 MIR452-201ENST00000385020 85 ntBASIC1.2□□□□□ -2.22
SOX3P41225 MIR526A2-201ENST00000390198 65 ntBASIC1.2□□□□□ -2.22
SOX3P41225 RNA5SP496-201ENST00000391240 109 ntBASIC1.2□□□□□ -2.22
SOX3P41225 MIR1298-201ENST00000408783 112 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms