Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.57□□□□□ -2.32
SCN1AP35498 SNORD41-201ENST00000386967 70 ntBASIC0.57□□□□□ -2.32
SCN1AP35498 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.57□□□□□ -2.32
SCN1AP35498 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC0.57□□□□□ -2.32
SCN1AP35498 RNU7-21P-201ENST00000459430 62 ntBASIC0.57□□□□□ -2.32
SCN1AP35498 HMGN1P10-201ENST00000474557 553 ntBASIC0.57□□□□□ -2.32
SCN1AP35498 RN7SKP164-201ENST00000516138 266 ntBASIC0.57□□□□□ -2.32
SCN1AP35498 AC127455.1-201ENST00000565496 145 ntBASIC0.57□□□□□ -2.32
SCN1AP35498 SNORD113-5-201ENST00000607261 78 ntBASIC0.57□□□□□ -2.32
SCN1AP35498 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
SCN1AP35498 Y_RNA.5-201ENST00000362334 102 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 RNA5SP257-201ENST00000363023 116 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 RNU4-50P-201ENST00000364361 141 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 Y_RNA.242-201ENST00000364473 110 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 SNORD14.1-201ENST00000365609 90 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 Y_RNA.419-201ENST00000384041 102 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 SNORA72.4-201ENST00000384174 132 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 SNORD63-201ENST00000384262 68 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 Y_RNA.537-201ENST00000384626 109 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 SNORA36B-201ENST00000410438 131 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 SNRPGP14-201ENST00000435400 219 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 SNORD124-201ENST00000459577 104 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 RNU6-1046P-201ENST00000516538 107 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 RNU6-1007P-201ENST00000516586 107 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 MIR5692C2-201ENST00000577959 77 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 MIR548AR-201ENST00000582191 57 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 AC013791.1-201ENST00000616619 62 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 AC022140.2-201ENST00000623500 188 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 MIR6079-201ENST00000635807 62 ntBASIC0.56□□□□□ -2.32
SCN1AP35498 SNORD113.3-201ENST00000364630 78 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 SNORD50B-201ENST00000364995 70 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 RNU6-396P-201ENST00000365369 105 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 SNORA2.2-201ENST00000365473 135 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 SNORD42.2-201ENST00000365570 69 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 Y_RNA.424-201ENST00000384063 103 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 Y_RNA.527-201ENST00000384573 102 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 Y_RNA.541-201ENST00000384640 113 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 MIR605-201ENST00000385078 83 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 MTCO2P33-201ENST00000402100 465 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 SNORD111-201ENST00000408139 94 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 HMGN2P32-201ENST00000444648 269 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 HSPE1P25-201ENST00000455484 251 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 RNU6-1132P-201ENST00000459214 107 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 RNU7-181P-201ENST00000517234 74 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.55□□□□□ -2.32
SCN1AP35498 AL590095.2-201ENST00000604136 117 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 Y_RNA.44-201ENST00000362676 108 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 RNA5SP264-201ENST00000363115 107 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 Y_RNA.374-201ENST00000365606 101 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 RNU6-926P-201ENST00000384075 107 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 Y_RNA.439-201ENST00000384119 94 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 RNU6-1237P-201ENST00000384777 107 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 MIR15B-201ENST00000385045 98 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 MTND4P19-201ENST00000446659 478 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 MTND4LP30-201ENST00000454092 297 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 SNORD11-201ENST00000459124 84 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 Y_RNA.631-201ENST00000459607 101 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 Y_RNA.772-201ENST00000606692 102 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 AL160413.1-201ENST00000622780 310 ntBASIC0.55□□□□□ -2.32
SCN1AP35498 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.55□□□□□ -2.32
SCN1AP35498 Y_RNA.70-201ENST00000362886 110 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 SNORD81.1-201ENST00000363064 77 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 SNORD114-24-201ENST00000365029 72 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 MIR215-201ENST00000384858 110 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 RNU2-14P-201ENST00000411053 191 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 AL358176.2-201ENST00000425769 204 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 AC024067.1-201ENST00000426199 223 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 SNORD45.4-201ENST00000516629 73 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 MIR4795-201ENST00000584182 89 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 PRELID3BP2-201ENST00000605362 201 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 AC007485.1-201ENST00000616755 206 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 RNU6-674P-201ENST00000363831 107 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 MIR570-201ENST00000384917 97 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 U8.17-201ENST00000391292 132 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 MIR1302-7-201ENST00000408841 72 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 PDCD5P2-201ENST00000507570 312 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 SCARNA8-201ENST00000515924 131 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 RPL23AP91-201ENST00000569211 455 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 MIR1273G-201ENST00000577677 100 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 AC006441.5-201ENST00000612680 209 ntBASIC0.54□□□□□ -2.32
SCN1AP35498 RNA5SP347-201ENST00000362445 119 ntBASIC0.53□□□□□ -2.32
SCN1AP35498 SNORA1.2-201ENST00000365189 134 ntBASIC0.53□□□□□ -2.32
SCN1AP35498 Y_RNA.393-201ENST00000383936 102 ntBASIC0.53□□□□□ -2.32
SCN1AP35498 RNU6-1067P-201ENST00000384752 107 ntBASIC0.53□□□□□ -2.32
SCN1AP35498 MT-TT-201ENST00000387460 66 ntBASIC0.53□□□□□ -2.32
SCN1AP35498 RNA5SP193-201ENST00000410353 107 ntBASIC0.53□□□□□ -2.32
SCN1AP35498 BTF3P11-201ENST00000426582 477 ntBASIC0.53□□□□□ -2.32
SCN1AP35498 PSMC1P5-201ENST00000512850 177 ntBASIC0.53□□□□□ -2.32
SCN1AP35498 MIR2681-201ENST00000581814 105 ntBASIC0.53□□□□□ -2.32
SCN1AP35498 AC037487.3-201ENST00000606668 112 ntBASIC0.53□□□□□ -2.32
SCN1AP35498 Y_RNA.31-201ENST00000362574 102 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 RNA5SP48-201ENST00000363969 126 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 Y_RNA.263-201ENST00000364659 114 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 RNU6-21P-201ENST00000384710 107 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 SNORD28B-201ENST00000390993 75 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 MIR1278-201ENST00000408753 81 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 RNU6-613P-201ENST00000410412 108 ntBASIC0.52□□□□□ -2.33
SCN1AP35498 CYCTP-201ENST00000504253 315 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms