Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 Y_RNA.252-201ENST00000364556 101 ntBASIC0.77□□□□□ -2.29
BDNFP23560 Y_RNA.458-201ENST00000384240 102 ntBASIC0.77□□□□□ -2.29
BDNFP23560 SEPT14P8-201ENST00000508026 178 ntBASIC0.77□□□□□ -2.29
BDNFP23560 AC018659.1-201ENST00000551083 169 ntBASIC0.77□□□□□ -2.29
BDNFP23560 MIR5000-201ENST00000577717 103 ntBASIC0.77□□□□□ -2.29
BDNFP23560 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.76□□□□□ -2.29
BDNFP23560 U8.7-201ENST00000364940 136 ntBASIC0.76□□□□□ -2.29
BDNFP23560 Y_RNA.354-201ENST00000365448 111 ntBASIC0.76□□□□□ -2.29
BDNFP23560 MIR1827-201ENST00000408549 66 ntBASIC0.76□□□□□ -2.29
BDNFP23560 POLR2KP2-201ENST00000438155 177 ntBASIC0.76□□□□□ -2.29
BDNFP23560 MIR4714-201ENST00000580728 77 ntBASIC0.76□□□□□ -2.29
BDNFP23560 AC008507.4-201ENST00000585464 127 ntBASIC0.76□□□□□ -2.29
BDNFP23560 SNORD113-5-201ENST00000607261 78 ntBASIC0.76□□□□□ -2.29
BDNFP23560 MIR6516-201ENST00000630554 81 ntBASIC0.76□□□□□ -2.29
BDNFP23560 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
BDNFP23560 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.75□□□□□ -2.29
BDNFP23560 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
BDNFP23560 Y_RNA.168-201ENST00000363740 102 ntBASIC0.75□□□□□ -2.29
BDNFP23560 MIR508-201ENST00000384857 115 ntBASIC0.75□□□□□ -2.29
BDNFP23560 RNU1-119P-201ENST00000391122 165 ntBASIC0.75□□□□□ -2.29
BDNFP23560 SNORA36B-201ENST00000410438 131 ntBASIC0.75□□□□□ -2.29
BDNFP23560 AC107297.1-201ENST00000459991 176 ntBASIC0.75□□□□□ -2.29
BDNFP23560 FGF7P4-201ENST00000509595 295 ntBASIC0.75□□□□□ -2.29
BDNFP23560 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.75□□□□□ -2.29
BDNFP23560 AC133485.1-201ENST00000567176 124 ntBASIC0.75□□□□□ -2.29
BDNFP23560 AC138907.6-201ENST00000568401 126 ntBASIC0.75□□□□□ -2.29
BDNFP23560 AP000753.3-201ENST00000604083 169 ntBASIC0.75□□□□□ -2.29
BDNFP23560 RNU6-1115P-201ENST00000362490 106 ntBASIC0.74□□□□□ -2.29
BDNFP23560 RNU6-268P-201ENST00000364174 107 ntBASIC0.74□□□□□ -2.29
BDNFP23560 SNORD105-201ENST00000386910 85 ntBASIC0.74□□□□□ -2.29
BDNFP23560 MT-TN-201ENST00000387400 73 ntBASIC0.74□□□□□ -2.29
BDNFP23560 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.74□□□□□ -2.29
BDNFP23560 RNU6-847P-201ENST00000411115 108 ntBASIC0.74□□□□□ -2.29
BDNFP23560 AF228730.4-201ENST00000421457 183 ntBASIC0.74□□□□□ -2.29
BDNFP23560 RBMX2P4-201ENST00000441256 376 ntBASIC0.74□□□□□ -2.29
BDNFP23560 Y_RNA.632-201ENST00000459189 102 ntBASIC0.74□□□□□ -2.29
BDNFP23560 SNORD19B-201ENST00000459623 84 ntBASIC0.74□□□□□ -2.29
BDNFP23560 RNA5SP436-201ENST00000516020 115 ntBASIC0.74□□□□□ -2.29
BDNFP23560 SNORD81.1-201ENST00000363064 77 ntBASIC0.73□□□□□ -2.29
BDNFP23560 RNY1-201ENST00000364228 113 ntBASIC0.73□□□□□ -2.29
BDNFP23560 RNU6-1335P-201ENST00000365426 107 ntBASIC0.73□□□□□ -2.29
BDNFP23560 Y_RNA.471-201ENST00000384312 102 ntBASIC0.73□□□□□ -2.29
BDNFP23560 MIR613-201ENST00000385248 95 ntBASIC0.73□□□□□ -2.29
BDNFP23560 MTCO2P33-201ENST00000402100 465 ntBASIC0.73□□□□□ -2.29
BDNFP23560 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.73□□□□□ -2.29
BDNFP23560 RNU4-54P-201ENST00000516428 129 ntBASIC0.73□□□□□ -2.29
BDNFP23560 RPL23AP91-201ENST00000569211 455 ntBASIC0.73□□□□□ -2.29
BDNFP23560 AC006441.5-201ENST00000612680 209 ntBASIC0.73□□□□□ -2.29
BDNFP23560 AC015726.2-201ENST00000620112 122 ntBASIC0.73□□□□□ -2.29
BDNFP23560 MIR377-201ENST00000362145 69 ntBASIC0.72□□□□□ -2.29
BDNFP23560 Y_RNA.383-201ENST00000383855 97 ntBASIC0.72□□□□□ -2.29
BDNFP23560 SNORD28B-201ENST00000390993 75 ntBASIC0.72□□□□□ -2.29
BDNFP23560 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.72□□□□□ -2.29
BDNFP23560 SNRPGP14-201ENST00000435400 219 ntBASIC0.72□□□□□ -2.29
BDNFP23560 RNU6-475P-201ENST00000516073 104 ntBASIC0.72□□□□□ -2.29
BDNFP23560 AC004812.1-201ENST00000540773 146 ntBASIC0.72□□□□□ -2.29
BDNFP23560 AC011195.1-201ENST00000578177 177 ntBASIC0.72□□□□□ -2.29
BDNFP23560 AL590095.2-201ENST00000604136 117 ntBASIC0.72□□□□□ -2.29
BDNFP23560 MIR6515-201ENST00000619843 57 ntBASIC0.72□□□□□ -2.29
BDNFP23560 AC023934.1-201ENST00000574529 2389 ntBASIC0.72□□□□□ -2.29
BDNFP23560 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
BDNFP23560 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
BDNFP23560 Y_RNA.112-201ENST00000363250 102 ntBASIC0.71□□□□□ -2.3
BDNFP23560 SNORA72.1-201ENST00000363485 129 ntBASIC0.71□□□□□ -2.3
BDNFP23560 Y_RNA.466-201ENST00000384294 113 ntBASIC0.71□□□□□ -2.3
BDNFP23560 NDUFA4P2-201ENST00000489989 244 ntBASIC0.71□□□□□ -2.3
BDNFP23560 RNU4-77P-201ENST00000516692 156 ntBASIC0.71□□□□□ -2.3
BDNFP23560 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.71□□□□□ -2.3
BDNFP23560 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.71□□□□□ -2.3
BDNFP23560 RNU6-144P-201ENST00000383951 107 ntBASIC0.7□□□□□ -2.3
BDNFP23560 SNORA72.4-201ENST00000384174 132 ntBASIC0.7□□□□□ -2.3
BDNFP23560 RNU6-1009P-201ENST00000390996 107 ntBASIC0.7□□□□□ -2.3
BDNFP23560 MIR1302-7-201ENST00000408841 72 ntBASIC0.7□□□□□ -2.3
BDNFP23560 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.7□□□□□ -2.3
BDNFP23560 RNU7-141P-201ENST00000459304 62 ntBASIC0.7□□□□□ -2.3
BDNFP23560 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.7□□□□□ -2.3
BDNFP23560 RNU6-899P-201ENST00000363947 107 ntBASIC0.69□□□□□ -2.3
BDNFP23560 RNU6-654P-201ENST00000364373 107 ntBASIC0.69□□□□□ -2.3
BDNFP23560 RNU6-937P-201ENST00000384325 106 ntBASIC0.69□□□□□ -2.3
BDNFP23560 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.69□□□□□ -2.3
BDNFP23560 AC082651.2-201ENST00000496833 166 ntBASIC0.69□□□□□ -2.3
BDNFP23560 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.69□□□□□ -2.3
BDNFP23560 MIR4791-201ENST00000607666 84 ntBASIC0.69□□□□□ -2.3
BDNFP23560 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.69□□□□□ -2.3
BDNFP23560 Y_RNA.143-201ENST00000363520 106 ntBASIC0.68□□□□□ -2.3
BDNFP23560 RNU1-133P-201ENST00000364867 167 ntBASIC0.68□□□□□ -2.3
BDNFP23560 RNU4-45P-201ENST00000365469 141 ntBASIC0.68□□□□□ -2.3
BDNFP23560 RNU4-30P-201ENST00000410245 143 ntBASIC0.68□□□□□ -2.3
BDNFP23560 MTND5P15-201ENST00000434246 349 ntBASIC0.68□□□□□ -2.3
BDNFP23560 RNU6-1132P-201ENST00000459214 107 ntBASIC0.68□□□□□ -2.3
BDNFP23560 MIR3145-201ENST00000580727 82 ntBASIC0.68□□□□□ -2.3
BDNFP23560 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.68□□□□□ -2.3
BDNFP23560 AC012433.1-201ENST00000588916 398 ntBASIC0.68□□□□□ -2.3
BDNFP23560 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
BDNFP23560 MIR598-201ENST00000384868 97 ntBASIC0.67□□□□□ -2.3
BDNFP23560 RNA5SP222-201ENST00000411039 105 ntBASIC0.67□□□□□ -2.3
BDNFP23560 AC244098.3-201ENST00000424803 96 ntBASIC0.67□□□□□ -2.3
BDNFP23560 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.67□□□□□ -2.3
BDNFP23560 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.67□□□□□ -2.3
BDNFP23560 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms