Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 Y_RNA.11-201ENST00000362375 109 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.19-201ENST00000362462 99 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 SNORD50B-201ENST00000364995 70 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.336-201ENST00000365307 109 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.541-201ENST00000384640 113 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.569-201ENST00000384749 103 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 RNU6-131P-201ENST00000391144 107 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 MIR1298-201ENST00000408783 112 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 AL591704.2-201ENST00000421658 181 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 MTCO1P5-201ENST00000433573 344 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 RPS23P4-201ENST00000487908 423 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 SNORD116-28-201ENST00000516123 91 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 SNORD45.4-201ENST00000516629 73 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 AC091895.1-201ENST00000624494 256 ntBASIC1.22□□□□□ -2.21
CPSF3Q9UKF6 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
CPSF3Q9UKF6 RNU6-290P-201ENST00000365212 101 ntBASIC1.21□□□□□ -2.22
CPSF3Q9UKF6 RNU6-969P-201ENST00000383900 105 ntBASIC1.21□□□□□ -2.22
CPSF3Q9UKF6 MIR452-201ENST00000385020 85 ntBASIC1.21□□□□□ -2.22
CPSF3Q9UKF6 RNU6-1248P-201ENST00000391096 64 ntBASIC1.21□□□□□ -2.22
CPSF3Q9UKF6 AC005534.2-201ENST00000431047 433 ntBASIC1.21□□□□□ -2.22
CPSF3Q9UKF6 AL133373.1-201ENST00000497098 94 ntBASIC1.21□□□□□ -2.22
CPSF3Q9UKF6 RNY3P15-201ENST00000516297 97 ntBASIC1.21□□□□□ -2.22
CPSF3Q9UKF6 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.21□□□□□ -2.22
CPSF3Q9UKF6 AC005357.1-201ENST00000588399 301 ntBASIC1.21□□□□□ -2.22
CPSF3Q9UKF6 AC044792.1-201ENST00000593294 196 ntBASIC1.21□□□□□ -2.22
CPSF3Q9UKF6 AC134026.1-201ENST00000623249 2239 ntBASIC1.21□□□□□ -2.22
CPSF3Q9UKF6 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
CPSF3Q9UKF6 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.2□□□□□ -2.22
CPSF3Q9UKF6 Y_RNA.64-201ENST00000362845 102 ntBASIC1.2□□□□□ -2.22
CPSF3Q9UKF6 RNU6-1209P-201ENST00000363655 107 ntBASIC1.2□□□□□ -2.22
CPSF3Q9UKF6 Y_RNA.796-201ENST00000364268 102 ntBASIC1.2□□□□□ -2.22
CPSF3Q9UKF6 Y_RNA.799-201ENST00000364992 102 ntBASIC1.2□□□□□ -2.22
CPSF3Q9UKF6 RNU6-985P-201ENST00000410182 104 ntBASIC1.2□□□□□ -2.22
CPSF3Q9UKF6 SNORA36B-201ENST00000410438 131 ntBASIC1.2□□□□□ -2.22
CPSF3Q9UKF6 MRPS35P2-201ENST00000508242 191 ntBASIC1.2□□□□□ -2.22
CPSF3Q9UKF6 RNA5SP404-201ENST00000517118 132 ntBASIC1.2□□□□□ -2.22
CPSF3Q9UKF6 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 RNU6-1084P-201ENST00000362498 107 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 RNU1-124P-201ENST00000363861 145 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 snoU2-30.1-201ENST00000365012 70 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 MIR516B2-201ENST00000385190 85 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 RNU6-763P-201ENST00000390865 106 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 MIR1278-201ENST00000408753 81 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 RNU6-437P-201ENST00000459408 95 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 AC048334.1-201ENST00000477975 159 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 NDUFA4P2-201ENST00000489989 244 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 SNORA31.2-201ENST00000516019 134 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 RN7SKP179-201ENST00000516126 217 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 RNU6-947P-201ENST00000516264 106 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 AC090142.3-201ENST00000519012 385 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 AL357312.1-201ENST00000603879 298 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 AL096861.1-201ENST00000610899 123 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 AC027335.2-201ENST00000624030 375 ntBASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
CPSF3Q9UKF6 RNU6-639P-201ENST00000384074 107 ntBASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 SNORA25-201ENST00000384384 134 ntBASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 MTCO2P33-201ENST00000402100 465 ntBASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 RNU6-1054P-201ENST00000411293 104 ntBASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 RNU7-40P-201ENST00000516397 64 ntBASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 SNORD111.1-201ENST00000516421 86 ntBASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 AP003733.2-201ENST00000529409 171 ntBASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 HSPE1P19-201ENST00000603327 295 ntBASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 JPX_2.1-201ENST00000614161 69 ntBASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 AC068700.1-201ENST00000565862 3754 ntBASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 AL442644.1-201ENST00000454390 3105 ntBASIC1.18□□□□□ -2.22
CPSF3Q9UKF6 MIR337-201ENST00000362281 93 ntBASIC1.17□□□□□ -2.22
CPSF3Q9UKF6 Y_RNA.16-201ENST00000362421 102 ntBASIC1.17□□□□□ -2.22
CPSF3Q9UKF6 Y_RNA.164-201ENST00000363709 102 ntBASIC1.17□□□□□ -2.22
CPSF3Q9UKF6 RNU6-674P-201ENST00000363831 107 ntBASIC1.17□□□□□ -2.22
CPSF3Q9UKF6 AC245047.7-201ENST00000440265 293 ntBASIC1.17□□□□□ -2.22
CPSF3Q9UKF6 snoU13.25-201ENST00000458945 104 ntBASIC1.17□□□□□ -2.22
CPSF3Q9UKF6 Y_RNA.637-201ENST00000459424 114 ntBASIC1.17□□□□□ -2.22
CPSF3Q9UKF6 COX6CP14-201ENST00000469580 174 ntBASIC1.17□□□□□ -2.22
CPSF3Q9UKF6 RNU2-31P-201ENST00000516954 155 ntBASIC1.17□□□□□ -2.22
CPSF3Q9UKF6 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.17□□□□□ -2.22
CPSF3Q9UKF6 MIR4295-201ENST00000585286 85 ntBASIC1.17□□□□□ -2.22
CPSF3Q9UKF6 AL022345.2-201ENST00000606307 135 ntBASIC1.17□□□□□ -2.22
CPSF3Q9UKF6 Y_RNA.152-201ENST00000363578 100 ntBASIC1.16□□□□□ -2.22
CPSF3Q9UKF6 Y_RNA.363-201ENST00000365529 113 ntBASIC1.16□□□□□ -2.22
CPSF3Q9UKF6 AC113618.1-201ENST00000416747 285 ntBASIC1.16□□□□□ -2.22
CPSF3Q9UKF6 HMGN2P32-201ENST00000444648 269 ntBASIC1.16□□□□□ -2.22
CPSF3Q9UKF6 MTND5P22-201ENST00000458380 195 ntBASIC1.16□□□□□ -2.22
CPSF3Q9UKF6 AC087343.1-201ENST00000477341 475 ntBASIC1.16□□□□□ -2.22
CPSF3Q9UKF6 Y_RNA.714-201ENST00000517065 90 ntBASIC1.16□□□□□ -2.22
CPSF3Q9UKF6 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.16□□□□□ -2.22
CPSF3Q9UKF6 MIR3192-201ENST00000584920 77 ntBASIC1.16□□□□□ -2.22
CPSF3Q9UKF6 BX284668.6-201ENST00000606899 438 ntBASIC1.16□□□□□ -2.22
CPSF3Q9UKF6 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.15□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 168.7 ms