Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 SNORD111-201ENST00000408139 94 ntBASIC0.45□□□□□ -2.34
EXOSC4Q9NPD3 RNU6-710P-201ENST00000410424 105 ntBASIC0.45□□□□□ -2.34
EXOSC4Q9NPD3 HMGN1P10-201ENST00000474557 553 ntBASIC0.45□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.661-201ENST00000516003 99 ntBASIC0.45□□□□□ -2.34
EXOSC4Q9NPD3 RNU7-110P-201ENST00000516891 62 ntBASIC0.45□□□□□ -2.34
EXOSC4Q9NPD3 MIR4714-201ENST00000580728 77 ntBASIC0.45□□□□□ -2.34
EXOSC4Q9NPD3 MIR4423-201ENST00000580922 80 ntBASIC0.45□□□□□ -2.34
EXOSC4Q9NPD3 AP003357.1-201ENST00000604497 148 ntBASIC0.45□□□□□ -2.34
EXOSC4Q9NPD3 AC133104.2-201ENST00000615272 193 ntBASIC0.45□□□□□ -2.34
EXOSC4Q9NPD3 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.796-201ENST00000364268 102 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 SNORD113.3-201ENST00000364630 78 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.813-201ENST00000364639 102 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.799-201ENST00000364992 102 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 SNORA25.9-201ENST00000365087 128 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.456-201ENST00000384232 111 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.458-201ENST00000384240 102 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 RNU6-937P-201ENST00000384325 106 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 SNORD38C-201ENST00000384381 69 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 U8.19-201ENST00000459095 133 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 RNU7-115P-201ENST00000516433 55 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 RNU7-116P-201ENST00000516940 62 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 SNORD116.3-201ENST00000517176 78 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 RNU7-181P-201ENST00000517234 74 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 AC011195.1-201ENST00000578177 177 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 MIR4300-201ENST00000581016 96 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 AC025627.3-201ENST00000582078 182 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 MIR5188-201ENST00000583467 113 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 AC092447.9-201ENST00000603395 144 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 AC011373.1-201ENST00000607270 237 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 JPX_2.1-201ENST00000614161 69 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 MIR1302-1-201ENST00000637932 143 ntBASIC0.44□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.4-201ENST00000362333 112 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 RNU6-268P-201ENST00000364174 107 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.384-201ENST00000383909 102 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 RNU6-945P-201ENST00000383947 107 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.505-201ENST00000384489 102 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 SNORD72-201ENST00000390994 80 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 U8.17-201ENST00000391292 132 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 RNU2-14P-201ENST00000411053 191 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 AC005534.2-201ENST00000431047 433 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 SNRPGP14-201ENST00000435400 219 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 AC067940.1-201ENST00000458411 300 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 RNU6-1110P-201ENST00000516462 101 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 RNA5SP121-201ENST00000516537 101 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 AC127455.1-201ENST00000565496 145 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 MIR4452-201ENST00000583004 71 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 Pinc.1-201ENST00000616452 154 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 AC010205.1-201ENST00000616668 449 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 AC099654.14-201ENST00000638599 341 ntBASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.43□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.143-201ENST00000363520 106 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.164-201ENST00000363709 102 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 RNU6-442P-201ENST00000383968 104 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 RNY1P8-201ENST00000383970 114 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 MIR802-201ENST00000390235 94 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 RNU1-119P-201ENST00000391122 165 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 RNA5SP222-201ENST00000411039 105 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 AC244098.3-201ENST00000424803 96 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 RBMX2P4-201ENST00000441256 376 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.632-201ENST00000459189 102 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 snoU13.21-201ENST00000459368 105 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 RNU4-77P-201ENST00000516692 156 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 RNU11-2P-201ENST00000516898 142 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 RPL23AP91-201ENST00000569211 455 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 AL355375.2-201ENST00000574825 175 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 MIR548AO-201ENST00000579992 96 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.772-201ENST00000606692 102 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 AL132765.2-201ENST00000610812 351 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 MIR548AY-201ENST00000617669 107 ntBASIC0.42□□□□□ -2.34
EXOSC4Q9NPD3 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.187-201ENST00000363918 113 ntBASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 Y_RNA.286-201ENST00000364813 102 ntBASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 MTCO2P33-201ENST00000402100 465 ntBASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 SNORA36B-201ENST00000410438 131 ntBASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 AC015818.7-201ENST00000428754 109 ntBASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 AC087499.7-201ENST00000441958 109 ntBASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 SNORD58B-201ENST00000607313 66 ntBASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 MIR6788-201ENST00000618842 66 ntBASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 AC015726.2-201ENST00000620112 122 ntBASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 AC091925.1-201ENST00000623204 462 ntBASIC0.41□□□□□ -2.34
EXOSC4Q9NPD3 MIR1-1-201ENST00000362147 71 ntBASIC0.4□□□□□ -2.35
EXOSC4Q9NPD3 RNA5SP347-201ENST00000362445 119 ntBASIC0.4□□□□□ -2.35
EXOSC4Q9NPD3 SNORA36.2-201ENST00000384004 127 ntBASIC0.4□□□□□ -2.35
EXOSC4Q9NPD3 Y_RNA.462-201ENST00000384268 102 ntBASIC0.4□□□□□ -2.35
EXOSC4Q9NPD3 SNORD105-201ENST00000386910 85 ntBASIC0.4□□□□□ -2.35
EXOSC4Q9NPD3 AL603910.2-201ENST00000407268 136 ntBASIC0.4□□□□□ -2.35
EXOSC4Q9NPD3 MIR1827-201ENST00000408549 66 ntBASIC0.4□□□□□ -2.35
EXOSC4Q9NPD3 MIR548J-201ENST00000408833 112 ntBASIC0.4□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 136.7 ms