Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MIR376A1-201ENST00000616574 68 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 AC068647.2-201ENST00000637380 353 ntBASIC1.11□□□□□ -2.23
ZNF540Q8NDQ6 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.16-201ENST00000362421 102 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 SNORD113-8-201ENST00000363497 74 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.162-201ENST00000363683 102 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-1310P-201ENST00000384153 107 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 SNORD116-13-201ENST00000384408 92 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 MIR518E-201ENST00000385252 88 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 MT-TW-201ENST00000387382 68 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 MIR873-201ENST00000401120 77 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 AL034345.1-201ENST00000407768 123 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 MIR1276-201ENST00000408707 83 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 RNA5SP475-201ENST00000410568 110 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 AL731563.1-201ENST00000442202 214 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 HMGN1P10-201ENST00000474557 553 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 AC097462.1-201ENST00000514125 324 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-155P-201ENST00000516347 100 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 DEFB117-201ENST00000602356 141 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 AL513534.2-201ENST00000603836 250 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 AC022217.4-201ENST00000604389 163 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 AP001282.2-201ENST00000616149 309 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 AL513423.1-201ENST00000621695 132 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 AC006435.5-201ENST00000624486 112 ntBASIC1.1□□□□□ -2.23
ZNF540Q8NDQ6 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 SNORD114-7-201ENST00000362520 77 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-1266P-201ENST00000362794 105 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.84-201ENST00000363011 104 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.269-201ENST00000364685 89 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.329-201ENST00000365209 107 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.331-201ENST00000365267 102 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 SNORA40.6-201ENST00000391153 128 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 RNU5A-5P-201ENST00000411054 116 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 DYNLT3P2-201ENST00000442517 295 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 AC005042.3-201ENST00000453230 174 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 RNU7-94P-201ENST00000459576 63 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 AC004223.1-201ENST00000479840 271 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 RNU6-63P-201ENST00000516690 95 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 Y_RNA.713-201ENST00000517013 96 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 AP003733.2-201ENST00000529409 171 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 AL137100.2-201ENST00000555786 315 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 AC091178.2-201ENST00000584401 117 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 MIR4438-201ENST00000585271 93 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.09□□□□□ -2.23
ZNF540Q8NDQ6 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.24
ZNF540Q8NDQ6 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-1309P-201ENST00000363305 108 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.136-201ENST00000363444 102 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.191-201ENST00000363972 113 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.376-201ENST00000365638 108 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.396-201ENST00000383949 103 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.483-201ENST00000384380 101 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-505P-201ENST00000384427 107 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.574-201ENST00000384766 95 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.602-201ENST00000410535 92 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-1203P-201ENST00000410703 110 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 AL591704.2-201ENST00000421658 181 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 RNA5SP20-201ENST00000515976 84 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 SNORA31.10-201ENST00000516482 106 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-1337P-201ENST00000516525 95 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-635P-201ENST00000516651 102 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 RNU7-110P-201ENST00000516891 62 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 MIR3660-201ENST00000584845 100 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 AC011373.1-201ENST00000607270 237 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 AC004832.4-201ENST00000608952 331 ntBASIC1.08□□□□□ -2.24
ZNF540Q8NDQ6 RNU4-80P-201ENST00000363200 141 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.116-201ENST00000363292 103 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.310-201ENST00000365063 113 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-407P-201ENST00000365280 104 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.383-201ENST00000383855 97 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 AC245047.3-201ENST00000429428 127 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 MTCYBP9-201ENST00000431021 303 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 MTCO1P5-201ENST00000433573 344 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 RPS29P28-201ENST00000446439 141 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 RPS27P22-201ENST00000478056 241 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 MTCO2P24-201ENST00000515611 426 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 RNU7-99P-201ENST00000516271 62 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 RNY3P15-201ENST00000516297 97 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-1045P-201ENST00000516321 107 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 MIR3684-201ENST00000579779 74 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 SNORD113-5-201ENST00000607261 78 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 MIR8054-201ENST00000620877 86 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 MIR8062-201ENST00000621515 85 ntBASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
ZNF540Q8NDQ6 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.47-201ENST00000362697 108 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.224-201ENST00000364308 111 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 RNU6-290P-201ENST00000365212 101 ntBASIC1.06□□□□□ -2.24
ZNF540Q8NDQ6 Y_RNA.459-201ENST00000384251 102 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms