Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx56Q9D0R4 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC16.88■□□□□ 0.29
Ddx56Q9D0R4 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Ddx56Q9D0R4 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx56Q9D0R4 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC16.88■□□□□ 0.29
Ddx56Q9D0R4 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
Ddx56Q9D0R4 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx56Q9D0R4 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx56Q9D0R4 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx56Q9D0R4 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ddx56Q9D0R4 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
Ddx56Q9D0R4 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
Ddx56Q9D0R4 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Ntrk2-205ENSMUST00000224402 2284 ntBASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ddx56Q9D0R4 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Dancr-204ENSMUST00000132389 2347 ntBASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Ddx56Q9D0R4 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 AC130713.1-201ENSMUST00000228853 1096 ntBASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Ddx56Q9D0R4 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Ddx56Q9D0R4 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms