Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Vps39Q8R5L3 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Gm10252-201ENSMUST00000209541 832 ntBASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Vps39Q8R5L3 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
Vps39Q8R5L3 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC16.08■□□□□ 0.17
Vps39Q8R5L3 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Vps39Q8R5L3 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Vps39Q8R5L3 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
Vps39Q8R5L3 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Vps39Q8R5L3 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Vps39Q8R5L3 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps39Q8R5L3 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC16.08■□□□□ 0.16
Vps39Q8R5L3 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC16.08■□□□□ 0.16
Vps39Q8R5L3 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps39Q8R5L3 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps39Q8R5L3 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps39Q8R5L3 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Vps39Q8R5L3 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
Vps39Q8R5L3 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps39Q8R5L3 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Vps39Q8R5L3 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Vps39Q8R5L3 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Vps39Q8R5L3 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC16.06■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms