Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Gm23634-201ENSMUST00000175071 91 ntBASIC15.08■□□□□ 0
Clrn3Q8BHH8 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC15.08■□□□□ 0
Clrn3Q8BHH8 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC15.08■□□□□ 0
Clrn3Q8BHH8 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Clrn3Q8BHH8 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC15.08■□□□□ 0
Clrn3Q8BHH8 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC15.07■□□□□ 0
Clrn3Q8BHH8 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 AA414768-201ENSMUST00000121924 1257 ntBASIC15.07■□□□□ 0
Clrn3Q8BHH8 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
Clrn3Q8BHH8 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC15.07■□□□□ 0
Clrn3Q8BHH8 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Clrn3Q8BHH8 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC15.06■□□□□ 0
Clrn3Q8BHH8 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Clrn3Q8BHH8 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
Clrn3Q8BHH8 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Clrn3Q8BHH8 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Clrn3Q8BHH8 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC15.05■□□□□ 0
Clrn3Q8BHH8 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Clrn3Q8BHH8 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Clrn3Q8BHH8 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC15.05■□□□□ 0
Clrn3Q8BHH8 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ 0
Clrn3Q8BHH8 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn3Q8BHH8 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
Clrn3Q8BHH8 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
Clrn3Q8BHH8 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC15.05■□□□□ -0
Clrn3Q8BHH8 Gm6728-201ENSMUST00000178117 1065 ntBASIC15.05■□□□□ -0
Clrn3Q8BHH8 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC15.05■□□□□ -0
Clrn3Q8BHH8 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC15.05■□□□□ -0
Clrn3Q8BHH8 Gm36967-201ENSMUST00000193814 266 ntBASIC15.05■□□□□ -0
Clrn3Q8BHH8 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn3Q8BHH8 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn3Q8BHH8 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC15.05■□□□□ -0
Clrn3Q8BHH8 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Clrn3Q8BHH8 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms