Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vps54Q5SPW0 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Vps54Q5SPW0 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Gm11452-201ENSMUST00000122376 690 ntBASIC19.24■□□□□ 0.67
Vps54Q5SPW0 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Vps54Q5SPW0 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Gm4459-201ENSMUST00000118750 468 ntBASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Vps54Q5SPW0 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Gm13884-201ENSMUST00000118103 829 ntBASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Gm13830-205ENSMUST00000201195 1155 ntBASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vps54Q5SPW0 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Gm6296-201ENSMUST00000222599 943 ntBASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Vps54Q5SPW0 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms